PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027059001

Common Name

GSBRNA2T00027059001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 237aa MW: 25701.3 Da PI: 12.1105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027059001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00017	173	207	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N + L +l+P + kK s iLe+A++YI+ L+ GSBRNA2T00027059001 173 VNRKVRSLGRLVPGC-----KKESVPVILEEATDYIQALE 207 577777888899988.....899**************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.16	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-8	160	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-7	174	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MASLTSDNEQ PPTNSNSSST DHVRKKKSLF ASSPSSSRGN AASVPTRDGD SHPRWRSEKQ 60 QRIYSAKLIQ ALRQVRLSSS SSATTSSPTA QKRGKAVREA ADRALAVSAR GRTLWSRAIL 120 ANRIKLKFRK QKRPRQTVIP AVTTVVTTGA TSSRGRKRRV SVVGLNKKSL PTVNRKVRSL 180 GRLVPGCKKE SVPVILEEAT DYIQALEMQV RAMNSLVELL SGYSTPGSDS APPPIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.18365	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269\|PubMed:20023194, ECO:0000269\|PubMed:24009530}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027059001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269\|PubMed:24009530}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147147.1	1e-137	PREDICTED: transcription factor bHLH148
Refseq	XP_009147148.1	1e-137	PREDICTED: transcription factor bHLH148
Swissprot	Q9C8Z9	1e-83	BH148_ARATH; Transcription factor bHLH148
TrEMBL	A0A078GDS7	1e-167	A0A078GDS7_BRANA; BnaA05g30790D protein
STRING	Bra029590.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6157	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	1e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Sukweenadhi J, et al. Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress. Microbiol. Res., 2015. 172: p. 7-15 [PMID:25721473]