PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00026754001 | ||||||||
Common Name | GSBRNA2T00026754001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 323aa MW: 36121.9 Da PI: 9.1958 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.6 | 2.8e-05 | 34 | 74 | 25 | 55 |
--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55 ps++ e+LA+k ++ +q+ +WFqNrR+ GSBRNA2T00026754001 34 PSRHILEDLADKFsesverkgkiVVQFKQIWNWFQNRRYAL 74 7777777777777777777776678889**********965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0014 | 7 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-9 | 12 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 13 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00204 | 13 | 75 | No hit | No description |
Pfam | PF16719 | 9.2E-40 | 119 | 246 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRPPSNGSP AFRFNMAEVM EMEGILLQHN IAMPSRHILE DLADKFSESV ERKGKIVVQF 60 KQIWNWFQNR RYALRARRNK APGKLNVSSS MPPGVDSTNQ MRNVLSVPGV MRSDSYKSYL 120 EFEAKSARDG AWYDVHNFLA HRNLETGDPE VQVRFAGFEV GEDEWIKVKK HIRLRSHPCE 180 ASECVAVLAG DLVLCFQEGK DQALYFDAKV LDAQRRRHDI RGCRCRFLVR YSHDQSEEIV 240 PLRKICRRPE TDYRLQQLHS SSNDFGKSNQ LQKPAPDAAA APQSSASVPI VVPEKKDPSL 300 ISASATSVQP GSNAATVPAG SA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-45 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 3e-45 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-45 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28019 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00026754001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY093042 | 1e-174 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. | |||
GenBank | BT003428 | 1e-174 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022559725.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2-like | ||||
Swissprot | Q8RWJ7 | 0.0 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A078GGL9 | 0.0 | A0A078GGL9_BRANA; BnaC05g34750D protein | ||||
STRING | Bo5g118650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7399 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-165 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Publications ? help Back to Top | |||
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