PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025985001
Common NameGSBRNA2T00025985001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 187aa    MW: 20667.9 Da    PI: 7.6202
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025985001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.37.1e-5620116197
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdrflPian+srimk+ lPan+ki+kdake++qecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++y
  GSBRNA2T00025985001  20 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEILQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLTRY 109
                          69**************************************************************************************** PP

                NF-YB  91 relegek 97 
                          re+ g++
  GSBRNA2T00025985001 110 REVYGDS 116
                          ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-5316145IPR009072Histone-fold
SuperFamilySSF471136.29E-4023137IPR009072Histone-fold
PfamPF008083.5E-272690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-215472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-217391No hitNo description
PRINTSPR006151.9E-2192110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAESQTNSPG DQSPRSSSHV REQDRFLPIA NISRIMKRGL PANGKIAKDA KEILQECVSE  60
FISFVTSEAS DKCQREKRKT INGDDLLWAM ATLGFEEYIE PLKLYLTRYR EVYGDSKGSA  120
RGGDANANRD GQSSQNGQFS QFAHQGSYPQ GPYGNSQVTF PLLLFHTHSE YVSATHITTQ  180
IISSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4620111192Transcription factor HapC (Eurofung)
4g92_B1e-4620111192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025985001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141626.11e-106PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK44e-93NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A078K0091e-137A0A078K009_BRANA; BnaCnng76740D protein
STRINGBra017209.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-85nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]