PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025770001
Common NameGSBRNA2T00025770001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 256aa    MW: 28645.5 Da    PI: 9.2556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-163279148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd++lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
  GSBRNA2T00025770001 32 RGPWTVEEDKILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 79
                         89******************************99************97 PP
2Myb_DNA-binding445.3e-1490130648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00025770001  90 PDEEDLILRLHRLIGNK-WSLIAGRIP-GRTDNEIKNYWNTHL 130
                          79***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-212381IPR009057Homeodomain-like
PROSITE profilePS5129415.6412779IPR017930Myb domain
SuperFamilySSF466891.13E-2828126IPR009057Homeodomain-like
SMARTSM007174.6E-133181IPR001005SANT/Myb domain
PfamPF002498.6E-153279IPR001005SANT/Myb domain
CDDcd001672.52E-113479No hitNo description
PROSITE profilePS5129422.64880134IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2482134IPR009057Homeodomain-like
SMARTSM007172.3E-1284132IPR001005SANT/Myb domain
PfamPF002495.8E-1390130IPR001005SANT/Myb domain
CDDcd001672.21E-1090130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLKTVDMTSS RGKRSVAKKM TTPCCTKMGM KRGPWTVEED KILVSFIKKE GEGRWRSLPK  60
RAGLLRCGKS CRLRWMNYLR PSVKRGGIAP DEEDLILRLH RLIGNKWSLI AGRIPGRTDN  120
EIKNYWNTHL RKKLLSQGID PQTHKPLDAS NTHKPREEVS GGQNLLEPNS SPHTDDTTVS  180
RGSGAGKISV SVFGDEDFGF CYDDKFSSFL NSVINDDPFD SNIPILSHPL QTHDFIDEIV  240
GTSSSLGHDQ RPEDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25321347108B-MYB
1h8a_C5e-253013425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025770001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195871e-141AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146480.10.0PREDICTED: transcription repressor MYB5
SwissprotQ388501e-136MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A078J7B50.0A0A078J7B5_BRANA; BnaA05g37010D protein
TrEMBLA0A3P5YY230.0A0A3P5YY23_BRACM; Uncharacterized protein
STRINGBra027423.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-138myb domain protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]