PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00025691001

Common Name

GSBRNA2T00025691001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 507aa MW: 56118.5 Da PI: 10.1433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00025691001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	19	41	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C + F ++ +L +H +t H GSBRNA2T00025691001 19 ECSLCQRIFFTPQDLITHTNTfH 41 7*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	18	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56112	2.51E-18	258	348	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	3.7E-10	262	343	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MNAGFGMRKD LTRVSNRLEC SLCQRIFFTP QDLITHTNTF HSNHYYSNFS SSSVVAAPAP 60 APAPAPAPAP APAPATFRHY PNLNRNPNPA FPAMNRHDLN NYRSGPTDEQ GRLLNGSLAM 120 TPARNTNVLF GQQEKPKLMD LFPTMPSEGL RTLPLLSQLE ERTPQDTATE QGGANSSFID 180 LTNGEAAAVA WDEQLVGIVF EKTLVSGHLS ISLFLRVLLR PLNKLFVSYF FELKLPTVGF 240 WFPEIDEDKD QDIQIGFPTD VKENKNLTGT ARYASVNTHL GIEQSRRDDL ESLGYMLMYF 300 LRGSLPWQGL RAGTKKQKYD KINEKKRLTP VEVLSKNSPP EFTSYCLYPS LRPPLTIPVP 360 PSAEKAEKPS RQGTRDRLSG VFEAFTRRIG SGTGLQADWS SRPRTSENVL ASRDTLNKER 420 PITISRNQSF SRKAVAGSSV RVTSSADFLE NRSSRVVLNN GRPSTTQWTQ FPPPSSSSLA 480 TKAAAPSRVT PDVTLEFLTI GNGKRK*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MNAGFGMRKD LTRVSNRLEC SLCQRIFFTP QDLITHTNTF HSNHYYSNFS SSSVVAAPAP  60
APAPAPAPAP APAPATFRHY PNLNRNPNPA FPAMNRHDLN NYRSGPTDEQ GRLLNGSLAM  120
TPARNTNVLF GQQEKPKLMD LFPTMPSEGL RTLPLLSQLE ERTPQDTATE QGGANSSFID  180
LTNGEAAAVA WDEQLVGIVF EKTLVSGHLS ISLFLRVLLR PLNKLFVSYF FELKLPTVGF  240
WFPEIDEDKD QDIQIGFPTD VKENKNLTGT ARYASVNTHL GIEQSRRDDL ESLGYMLMYF  300
LRGSLPWQGL RAGTKKQKYD KINEKKRLTP VEVLSKNSPP EFTSYCLYPS LRPPLTIPVP  360
PSAEKAEKPS RQGTRDRLSG VFEAFTRRIG SGTGLQADWS SRPRTSENVL ASRDTLNKER  420
PITISRNQSF SRKAVAGSSV RVTSSADFLE NRSSRVVLNN GRPSTTQWTQ FPPPSSSSLA  480
TKAAAPSRVT PDVTLEFLTI GNGKRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3sv0_A	3e-38	262	348	168	254	Casein kinase I-like
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250\|UniProtKB:P48730}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00025691001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189246	1e-167	AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBank	AC232437	1e-167	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LSX4	9e-89	CKL8_ARATH; Casein kinase 1-like protein 8
TrEMBL	A0A078J159	0.0	A0A078J159_BRANA; BnaC08g50070D protein
STRING	Bo8g115560.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	4e-28	C2H2-like zinc finger protein

Publications ? help Back to Top
Lee JY, et al. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Plant Cell, 2005. 17(10): p. 2817-31 [PMID:16126836] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tan ST,Xue HW Casein kinase 1 regulates ethylene synthesis by phosphorylating and promoting the turnover of ACS5. Cell Rep, 2014. 9(5): p. 1692-1702 [PMID:25464840] Mittal S, et al. Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement. Front Chem, 2017. 5: p. 115 [PMID:29312925] Klimczak LJ, et al. Multiple isoforms of Arabidopsis casein kinase I combine conserved catalytic domains with variable carboxyl-terminal extensions. Plant Physiol., 1995. 109(2): p. 687-96 [PMID:7480353]