PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025194001
Common NameGSBRNA2T00025194001, LOC106387960
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 343aa    MW: 37592.1 Da    PI: 5.4525
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025194001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.2e-081958340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                         +r C+ +++  +  +C+ ++ +lC +C +++H+   H++v
  GSBRNA2T00025194001 19 ARSCDACKSASAAVYCRFDSAFLCITCDTSIHSFtrHERV 58
                         578*****************************65789876 PP
2zf-B_box261.9e-0860103542
             zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  GSBRNA2T00025194001  60 LCEVCEQAPAAVTCKADAASLCVTCDSDIHSAnplasrHERVPV 103
                          6*****************************66999999999986 PP
3CCT70.15.8e-24274317144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  GSBRNA2T00025194001 274 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 317
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-81760IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7931760IPR000315B-box-type zinc finger
CDDcd000215.29E-82058No hitNo description
PfamPF006431.5E-62058IPR000315B-box-type zinc finger
PROSITE profilePS5011910.70856103IPR000315B-box-type zinc finger
CDDcd000212.72E-860103No hitNo description
PfamPF006433.2E-660103IPR000315B-box-type zinc finger
SMARTSM003365.9E-1061103IPR000315B-box-type zinc finger
PfamPF062035.2E-18274316IPR010402CCT domain
PROSITE profilePS5101716.817274316IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGFGLESIKP LSGGWGAAAR SCDACKSASA AVYCRFDSAF LCITCDTSIH SFTRHERVYL  60
CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER VPVESFFDSA VAKISPSTFG  120
VLGDSTTVDL TAVPVIGNAD ELGLCPWLLP NDFNEPAKIE TVTELKSSEF MFSDFDRLID  180
FEYPNTFGAD SLVPVQTKTE PLPVTNNDHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE  240
YGVVPDGTTS VPFNRSTITT STGTTGEQPS SMDREARVLR YREKRKNRKF EKTIRYASRK  300
AYAESRPRIK GRFAKRTETE NDDVFFSQVY ASAGQYGVVP TF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.135460.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025194001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894791e-150AC189479.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB081M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556443.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A078J4C80.0A0A078J4C8_BRANA; BnaA02g35200D protein
TrEMBLA0A3P6A2K90.0A0A3P6A2K9_BRACM; Uncharacterized protein
STRINGBra020425.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]