PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025036001
Common NameGSBRNA2T00025036001, LOC106409224
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 262aa    MW: 29805.7 Da    PI: 4.646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025036001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18109159256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ +  l+g+
  GSBRNA2T00025036001 109 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFILRGH 159
                          59****999.**********954...4********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819953.14E-552108No hitNo description
CDDcd000185.66E-33108168No hitNo description
PROSITE profilePS5103223.064109166IPR001471AP2/ERF domain
SMARTSM003802.3E-36109172IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22109167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-31109168IPR001471AP2/ERF domain
PfamPF008471.2E-12110158IPR001471AP2/ERF domain
PRINTSPR003672.2E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.2E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKNTDPY FGEASSSPRS IKKMRDTDHR PKPYFPFTLD PTIQNQQQQH  60
FGYVQQHDQT MQGQNQMISF SPQQPQQQYW SGTLNLSQES VQPYSATKLY RGVRQRQWGK  120
WVAEIRKPRS RARLWLGTFD TAEEAAMAYD RQAFILRGHN ATLNFPEHYV NKEVELHDET  180
DASSSLDQKQ SEAPQLDEVN LEGEEEAVTN GGVEDGMAEA WLNAVTAGWG PESPLWDDLD  240
SSHFPQCSST SSASCPMRPY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13141KKMRDTDHRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025036001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894410.0AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705338.10.0ethylene-responsive transcription factor ERF054
SwissprotQ9M0J31e-121ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A078J0L80.0A0A078J0L8_BRANA; BnaC07g50590D protein
STRINGBo7g111910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-114ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]