PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00025034001 | ||||||||
Common Name | GSBRNA2T00025034001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 111aa MW: 12135.3 Da PI: 4.3416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.5 | 6.7e-08 | 11 | 37 | 27 | 53 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53 +r+r +lg+f+taeeAa a+ a+ ++ GSBRNA2T00025034001 11 QRARLWLGTFDTAEEAAIAYQAFILRS 37 469******************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.48 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-5 | 3 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-12 | 10 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-8 | 11 | 46 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGRRDTQATE QRARLWLGTF DTAEEAAIAY QAFILRSHNA TLNFPEHFVN KEVELHDETD 60 ASSSLDQKQP ETLLANKVNL GSNEVAVSDG GVEDGMAEAW LNAVTSRWGS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00025034001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596598.1 | 3e-49 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
Swissprot | Q9M0J3 | 6e-40 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A078J6B0 | 3e-75 | A0A078J6B0_BRANA; BnaC07g50570D protein | ||||
STRING | Bo7g111890.1 | 3e-72 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 2e-42 | ERF family protein |
Publications ? help Back to Top | |||
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