PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025021001
Common NameGSBRNA2T00025021001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 365aa    MW: 40541 Da    PI: 6.6788
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025021001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.9e-3065173389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ak  +++l+ +                           
  GSBRNA2T00025021001  65 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEAAKDDVDKLPPLqfphgfnqmypnlffgnsgigesssst 154
                          78*************************************************************555555555444444444444332222 PP

                  TCP  66 .....ssssaseceaesssssasnsssg...........k 89 
                               +                     +           +
  GSBRNA2T00025021001 155 safpgT---------------------NlgflesydlggS 173
                          222220.....................1333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.71166124IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2766193IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRSRDCDEEE IQAKQEGDHN ENNNHQVNLN NILQQQNQPS SLSSSRQWTS AFRNPRIVRV  60
SRTFGGKDRH SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLEAAKDD  120
VDKLPPLQFP HGFNQMYPNL FFGNSGIGES SSSTSAFPGT NLGFLESYDL GGSSSRTRSR  180
IQETPRESFD LDKGKWIKND ENADHHQDHG FDASHQHFSL TNPYNNSNAS SYYNLGHLQH  240
SLDQSGNNVT VAISNVPSNN NNNNLNLPPP SSAGDGSQLF FGPPPPAMSS LFPTYPSFLG  300
ASHHQHHHVV DGAGNLQLFR SNANTASQQQ MMTGNSSLIR PFHHLMSSNH DTDRHSSDDN  360
DSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1971125155Putative transcription factor PCF6
5zkt_B6e-1971125155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025021001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022571274.10.0transcription factor TCP5-like
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078J6M40.0A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBLA0A3P6E5P10.0A0A3P6E5P1_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-150TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]