PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024944001 | ||||||||
Common Name | GSBRNA2T00024944001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 184aa MW: 20843.4 Da PI: 8.0961 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 42.2 | 1.7e-13 | 108 | 141 | 25 | 56 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ..kYRla 56 ++AtPk+i++++kv+gLt+++vkSHLQ kYR++ GSBRNA2T00024944001 108 QVATPKQIRDIVKVDGLTNDEVKSHLQikKYRMH 141 78************************98899986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 108 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-10 | 108 | 140 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MIWFLCVAIE RLKQETSSVQ GVELETDNKK NWMSSAQLWI SNSNSQSQST NEEENRCVTQ 60 TCNNNKANQR GAILSFNRPP PPLPSPPLSL PTSEILTDYS SRIEQRSQVA TPKQIRDIVK 120 VDGLTNDEVK SHLQIKKYRM HIRMHPLHPL HPTNNFSASD QPRETQNLIS LSRSDSPQGP 180 LDW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024944001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316664 | 1e-31 | AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17. | |||
GenBank | ATU62741 | 1e-31 | U62741.1 Arabidopsis thaliana putative cytoskeletal protein mRNA, complete cds. | |||
GenBank | AY039841 | 1e-31 | AY039841.1 Arabidopsis thaliana AT4g37180/C7A10_180 mRNA, partial cds. | |||
GenBank | BT028985 | 1e-31 | BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022552063.1 | 3e-90 | transcription factor HHO5-like | ||||
Swissprot | F4JRB0 | 1e-51 | HHO5_ARATH; Transcription factor HHO5 | ||||
TrEMBL | A0A078K2I7 | 1e-132 | A0A078K2I7_BRANA; BnaCnng76060D protein | ||||
STRING | Bo4g053920.1 | 1e-66 | (Brassica oleracea) | ||||
STRING | Bo7g118260.1 | 2e-62 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.2 | 3e-42 | G2-like family protein |
Publications ? help Back to Top | |||
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