PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024886001
Common NameGSBRNA2T00024886001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 324aa    MW: 36427.9 Da    PI: 4.8805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024886001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-091311532346
                          -HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                          +W++Ia++++ gRt++++k++w++
  GSBRNA2T00024886001 131 RWSKIAQYLP-GRTDNEIKNYWRT 153
                          5*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-7129165IPR009057Homeodomain-like
PfamPF002493.1E-7131153IPR001005SANT/Myb domain
PROSITE profilePS500906.493131155IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-10131154IPR009057Homeodomain-like
CDDcd001675.62E-7131153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRIDDNEGVS ASSKHLVFAY YVTGHGFGHA TRVVEVVSHL IAAGHDSPRL KIRKVLLDCG  60
AVQADALTVD RLASLEKYVE TAVIPRAEIL ETEVEWLHSI KVDFVVFDVV PVACRAAADA  120
GIRSVCVTNF RWSKIAQYLP GRTDNEIKNY WRTRVQKQAR QLNIDSSSHQ FLEVVRSFWV  180
PRLIHKMKDY SNTNSKAPPT DSLGPVVQDN NFSHNSGLNN IDCSTSMSQD LAKISQLMDL  240
SDLETTNSMC LEGSRGSSNQ YVNEDHRCLE EEYIVTTMGN SDILPLQDCH VGVAYSTYEE  300
DVTQDPMWNM DDIWQFEEYA PFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024886001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708812.11e-144transcription factor MYB62-like
TrEMBLA0A078J0F80.0A0A078J0F8_BRANA; BnaA07g36950D protein
STRINGBra012482.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-87myb domain protein 116
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]