PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024885001 | ||||||||
Common Name | GSBRNA2T00024885001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 12182 Da PI: 9.9347 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++++ G g+W++ a+ g++R +k+c++rw++yl GSBRNA2T00024885001 20 KGPWTLEEDTLLTNYIAHNGEGRWNLLAKSSGLKRKGKSCRLRWLNYL 67 79******************************99*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 13 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.04 | 15 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-21 | 21 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.30E-9 | 22 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 71 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MSNIMKKRCN ENEESAEQRK GPWTLEEDTL LTNYIAHNGE GRWNLLAKSS GLKRKGKSCR 60 LRWLNYLKPD IKRGNLTPQE QLLILELHCK WGNSGSFVKA GDLLVL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 57 | LKRKGKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024885001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975663 | 1e-156 | KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103061.1 | 9e-62 | PREDICTED: transcription factor MYB24-like | ||||
Refseq | XP_013708812.1 | 1e-61 | transcription factor MYB62-like | ||||
Swissprot | Q9C9G7 | 3e-43 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A078J6G3 | 4e-71 | A0A078J6G3_BRANA; BnaA07g36940D protein | ||||
STRING | Bra012482.1-P | 3e-61 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 1e-59 | myb domain protein 116 |
Publications ? help Back to Top | |||
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