PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024836001
Common NameGSBRNA2T00024836001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 218aa    MW: 23177.2 Da    PI: 8.7078
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024836001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl+yeA+ r+ +Pv+Ga+g+++++++
  GSBRNA2T00024836001   2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPEPQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNW 91 
                          6*********************9998666789********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00024836001  92 NICQAAVETVLR 103
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5151107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PGLLAHGGGF  120
AGFPSVTSEE GSRSRSTLDS SAKKRKRVDS SELDLSLNPN LSTKTTPSPT RQRSGTPSMN  180
SEESVATTTS FWDATATGER YGNGGGGETR QLLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.114591e-119leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024836001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892581e-145AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130544.11e-136PREDICTED: LOB domain-containing protein 37-like
RefseqXP_013701885.11e-136LOB domain-containing protein 37-like
SwissprotQ9FN111e-108LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A078J6031e-158A0A078J603_BRANA; BnaAnng15250D protein
STRINGBra031833.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-90LOB domain-containing protein 37
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]