PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024550001 | ||||||||
Common Name | GSBRNA2T00024550001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 21042.9 Da PI: 6.9246 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 7e-44 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+Cak+C++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da++slv+eA+ar+rdPvyG+vg i+ lq+q+ ql GSBRNA2T00024550001 8 PCASCKLLRRRCAKECIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVTQL 97 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + +la++++e GSBRNA2T00024550001 98 QMQLAVAQTE 107 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.681 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-43 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRGPGSSPCA SCKLLRRRCA KECIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ 60 RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVTQLQMQ LAVAQTEILC IQMQHEPALQ 120 SHHEVFELDQ DDKAHLLHSN NNSINNCNNN YNLAYAMSSG QLNSNFASPS SIIQMQMQDP 180 LKQESLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-49 | 4 | 109 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-49 | 4 | 109 | 6 | 112 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024550001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232559 | 0.0 | AC232559.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH038M21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013733966.1 | 1e-138 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-106 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A078GFX3 | 1e-138 | A0A078GFX3_BRANA; BnaC03g16640D protein | ||||
TrEMBL | A0A0D3B456 | 1e-138 | A0A0D3B456_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AWK0 | 1e-138 | A0A3P6AWK0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g024350.1 | 1e-139 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-108 | LBD family protein |
Publications ? help Back to Top | |||
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