PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024209001

Common Name

GSBRNA2T00024209001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 337aa MW: 37701.8 Da PI: 9.8662

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024209001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.2	7.4e-08	205	242	17	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i eLe+ v++L+ae ++ el+ l++ GSBRNA2T00024209001 205 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 242 89*************************99999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0073	194	253	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.62E-15	197	244	No hit	No description
SuperFamily	SSF57959	7.74E-6	205	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	205	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAGTKGSESV RSLMNPGKNA LLPPKIPFPS GLMGSRHGHK VSVEKAHHHQ RTSSESHLVE 60 EELPFWLDDL LNEPESPSRK SGHRRSASDS YAYLDVANAA TTISDFSYRN PVASIQRGIQ 120 ELDPSQDASF YADGSFLKQR NRPSGARPSW TRESVGGGKH MGASSYISQD ATAETKRLSS 180 EENNSNPQPG AYEADNTKRA KQQFAQRSRV RKLQYISELE RNVQTLQAEG SKVSAELDFL 240 NQRNLILSLE NKALKHRLES IAQEKLIKQL EQEVLEREIG RLRALYQQQQ HTRQQSASHK 300 RASSKDLDSQ FSTLSLNAKD SNCRRDSLSV MGQFHF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024209001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352929	1e-149	AK352929.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-A16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013655769.1	0.0	uncharacterized protein At4g06598
Swissprot	Q8W3M7	4e-45	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A078GFA6	0.0	A0A078GFA6_BRANA; BnaA01g21580D protein
STRING	Bo1g087780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-175	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106360678

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]