PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023834001
Common NameGSBRNA2T00023834001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 229aa    MW: 25580.8 Da    PI: 6.793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023834001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16552148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd++lv  +++ G g+W++ +++ g+ R++k+c++rw +yl
  GSBRNA2T00023834001  5 RGPWTVEEDKILVSFIEKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 52
                         89******************************99************97 PP
2Myb_DNA-binding44.24.4e-1463103648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00023834001  63 PDEEDLILRLHRLIGNK-WSLIAGRIP-GRTDNEIKNYWNTHL 103
                          79***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.606156IPR017930Myb domain
SuperFamilySSF466896.13E-29199IPR009057Homeodomain-like
SMARTSM007175.5E-13454IPR001005SANT/Myb domain
PfamPF002496.2E-15552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-21659IPR009057Homeodomain-like
CDDcd001671.91E-11752No hitNo description
PROSITE profilePS5129418.29257107IPR017930Myb domain
SMARTSM007172.3E-1257105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2460107IPR009057Homeodomain-like
CDDcd001671.33E-1063103No hitNo description
PfamPF002494.9E-1363103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGMKRGPWTV EEDKILVSFI EKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG  60
IAPDEEDLIL RLHRLIGNKW SLIAGRIPGR TDNEIKNYWN THLRKKLLSQ GIDPQTHKPL  120
DASYTRKPIE EVSGGQNLLE PNSNSHTDDT TVSSGSGAGK ISVSVFGDED FGFCYDDKFS  180
SFLNSVINDD PFDSNIPILS QPLQTHDFIG EIVGTSSSLG HDQRPEDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2551074105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-25310725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023834001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584931.11e-169PREDICTED: transcription repressor MYB5
RefseqXP_013741458.11e-169transcription repressor MYB5-like
SwissprotQ388501e-123MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A3P6FFU21e-167A0A3P6FFU2_BRAOL; Uncharacterized protein
STRINGBra027423.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-125myb domain protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]