PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023738001
Common NameGSBRNA2T00023738001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 376aa    MW: 42713.7 Da    PI: 6.359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023738001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.58.1e-172575251
                  NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkv 51
                          pGfrFhPtd+elv +yL kkv  kk  +++e+i+++diyk++PwdLp++ 
  GSBRNA2T00023738001 25 LPGFRFHPTDKELVGFYLSKKVLLKKsSKIDEIISQIDIYKFDPWDLPRSS 75
                         59*******************887774778888**************9533 PP
2NAM88.71e-2714522253128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s   +++++glkktLv+y g+a kg+ktdW+mhe+rl
  GSBRNA2T00023738001 145 HTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSDgpSKAVIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 222
                          357899************************************9888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.19224257IPR003441NAC domain
SuperFamilySSF1019411.83E-142478IPR003441NAC domain
PfamPF023654.5E-2226222IPR003441NAC domain
SuperFamilySSF1019411.28E-30144257IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEMMGSWDK RREEQEEEEE QVLKLPGFRF HPTDKELVGF YLSKKVLLKK SSKIDEIISQ  60
IDIYKFDPWD LPRSSDRGGE VASAMFNLGC TDRGGELASD ELNLIEHSCC GTNILRGNPA  120
ITDVAYVTYG LATDQRCVWF EGSTHTEKES YFFCKRGRKY RNSIRPNRVT GSGFWKATGI  180
DKPIYSDGPS KAVIGLKKTL VYYIGSAGKG SKTDWMMHEF RLPTANDTIP GGSTHRSPTP  240
SSLLHAEVWT LCRIFKRNAS SRKYTPDSKE LASWERVKPQ QSNNREAAYI SFGDNESSTN  300
KINVMESKEN NERNVFQLHQ TPHPHQPIPM EYTSSTQVDN TVPHISNDNN MDDVNYENWD  360
ELRSVVEFAF GPSSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-2714726370171NO APICAL MERISTEM PROTEIN
1ut4_B9e-2714726370171NO APICAL MERISTEM PROTEIN
1ut7_A9e-2714726370171NO APICAL MERISTEM PROTEIN
1ut7_B9e-2714726370171NO APICAL MERISTEM PROTEIN
3swm_A1e-2614726373174NAC domain-containing protein 19
3swm_B1e-2614726373174NAC domain-containing protein 19
3swm_C1e-2614726373174NAC domain-containing protein 19
3swm_D1e-2614726373174NAC domain-containing protein 19
3swp_A1e-2614726373174NAC domain-containing protein 19
3swp_B1e-2614726373174NAC domain-containing protein 19
3swp_C1e-2614726373174NAC domain-containing protein 19
3swp_D1e-2614726373174NAC domain-containing protein 19
4dul_A9e-2714726370171NAC domain-containing protein 19
4dul_B9e-2714726370171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023738001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893351e-110AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585182.11e-172PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_013681465.11e-172transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-47NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078GDY50.0A0A078GDY5_BRANA; BnaC05g40430D protein
TrEMBLA0A0D3CKR70.0A0A0D3CKR7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EP500.0A0A3P6EP50_BRAOL; Uncharacterized protein
STRINGBo5g133050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-116NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]