PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023261001
Common NameGSBRNA2T00023261001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 419aa    MW: 46934.7 Da    PI: 5.6244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023261001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.81.1e-97304152373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsev 87 
                          ++lLl+cA+a++s+d++l+++lL+ l+++aspdg +++qRl++ f++AL ar +++ ++l++++ ++  +++ ++++++++++l  f ++
  GSBRNA2T00023261001  30 EQLLLHCATAIDSNDAALVHQLLWVLNNIASPDGdSSTQRLTSAFVRALLARAVSKIPTLFSTFgNTVFQPPADEIHRFSVVELagFIDL 119
                          79********************************779***************************877778888899999999999***** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgv 174
                          +P+++f++++aN+aIl aveg  +vHi+D+++++++Q p+L++a+a++ ++p  l++T+v+s++++    + ++ee+g++L +fA++ ++
  GSBRNA2T00023261001 120 TPWHRFGFIAANEAILTAVEGYAKVHIVDLSLTHCMQIPTLIDAIATKLNKPLLLKLTVVSSASNFppfINISYEELGSKLVNFATSRNI 209
                          **************************************************************99999999******************** PP

                 GRAS 175 pfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesF 253
                          +++f+++   +++ +++l l++Lr+ p   +Eal+Vn++++l +++de+++ +s      r+ +L++++sl+P++v+++e++ad++s ++
  GSBRNA2T00023261001 210 EMQFTIIpstYSDGFSSL-LQHLRMYPtsyNEALVVNCHMMLRYIPDETLTPSSpsslsLRNVFLNQLRSLNPTMVTLIEEDADLTSDNL 298
                          ******988666777777.99999999999****************9998777666666899**************************** PP

                 GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                          ++r+++a++y++  fd++++ +   se+r+ +E+e ++++i+nvva+eg er+er+et+++W er+++  F+ v+++e+a+++ k++l +
  GSBRNA2T00023261001 299 VTRLSSAFNYFWIPFDTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDNEFGGVRVREEAVSELKAMLGE 384
                          *********************7...9*********.****************************************************** PP

                 GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++ ++g++ +++++slvl+Wk++++v++++W
  GSBRNA2T00023261001 385 HAvGWGMKKDDDDESLVLTWKGHSVVFATVW 415
                          ******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.2573395IPR005202Transcription factor GRAS
PfamPF035143.8E-9530415IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTRTRIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALVHQ LLWVLNNIAS  60
PDGDSSTQRL TSAFVRALLA RAVSKIPTLF STFGNTVFQP PADEIHRFSV VELAGFIDLT  120
PWHRFGFIAA NEAILTAVEG YAKVHIVDLS LTHCMQIPTL IDAIATKLNK PLLLKLTVVS  180
SASNFPPFIN ISYEELGSKL VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE  240
ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSDNLVT  300
RLSSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM  360
RDNEFGGVRV REEAVSELKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-502441782474Protein SHORT-ROOT
5b3h_B5e-512441728420Protein SHORT-ROOT
5b3h_E5e-512441728420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023261001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564679.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078J3690.0A0A078J369_BRANA; BnaC08g48710D protein
STRINGBo8g079250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]