PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022803001
Common NameGSBRNA2T00022803001, LOC106370524, LOC106379634, LOC106418010
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 30670.7 Da    PI: 5.6605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022803001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-131461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  GSBRNA2T00022803001 14 RGPWTIEEDHRLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding52.61e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T  E++ + +++ qlG++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00022803001  67 RGGFTDAEEDTIMELHSQLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                          7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129412.95961IPR017930Myb domain
SuperFamilySSF466894.03E-2811108IPR009057Homeodomain-like
SMARTSM007176.4E-61363IPR001005SANT/Myb domain
PfamPF002491.3E-111461IPR001005SANT/Myb domain
CDDcd001672.74E-41661No hitNo description
PROSITE profilePS5129425.37562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2665117IPR009057Homeodomain-like
SMARTSM007176.9E-1566114IPR001005SANT/Myb domain
PfamPF002498.3E-1567110IPR001005SANT/Myb domain
CDDcd001676.10E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TDAEEDTIME LHSQLGNRWS KIASHFPGRT DNEIKNHWNT KIKKKMKHLG  120
LNQAAHEPIN SITNQTESKQ ITNPNMSSTI KEKEETKDQP KDDVIIETTK PLIVSNNDEE  180
IQTENCKTLY AEEVDIGSLF TMQDNEISIS SSSFSSLYSN ISRSESSSYL AGDSISLEQW  240
DLDMTDPLVP WDLFTNLDDT LFLYDKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022803001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895640.0AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665981.10.0myb-related protein 315-like
RefseqXP_013674997.10.0myb-related protein 315
RefseqXP_013714155.10.0myb-related protein 315-like
TrEMBLA0A078J2W10.0A0A078J2W1_BRANA; BnaC09g54480D protein
TrEMBLA0A3P6ERQ50.0A0A3P6ERQ5_BRAOL; Uncharacterized protein
STRINGBra008764.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-135myb domain protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]