PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00022200001

Common Name

GSBRNA2T00022200001, LOC106449852

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31923.8 Da PI: 6.7949

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00022200001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00022200001 70 KKRRLNMEQVKTLEKTFELGNKLELERKMQLARALGLQPRQIAIWFQNRRARWK 123 456899***********************************************9 PP
2	HD-ZIP_I/II	126.4	1.2e-40	69	160	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kLe erK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk ++dalk+en+rL++++e+L++e GSBRNA2T00022200001 69 EKKRRLNMEQVKTLEKTFELGNKLELERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKLKFDALKAENDRLQTHNEKLQAE 158 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 ++ GSBRNA2T00022200001 159 IM 160 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.63E-19	59	127	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	65	125	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	68	129	IPR001356	Homeobox domain
CDD	cd00086	8.02E-16	70	126	No hit	No description
Pfam	PF00046	3.0E-15	70	123	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.9E-19	72	132	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	105	121	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.2E-15	125	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSCNNGMSFF PSSFIIQNSY EDDHPHQTPS LAPLLPSCSM PQDLNGFASF IGKQILEEDY 60 SDDGSQMGEK KRRLNMEQVK TLEKTFELGN KLELERKMQL ARALGLQPRQ IAIWFQNRRA 120 RWKTKQLEKD YDTLKLKFDA LKAENDRLQT HNEKLQAEIM GLKNKEQTKS INLNKETEGS 180 CSNKSDNISD NLRLDISTPP PPSIESTITA GHPPPPQTVG RHFFPPSPAT ARTTTTTLKF 240 FQNSSSGQSM VKEENSISNM FYATDDHSGF WPWLDQQQYN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	125	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00022200001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353311	0.0	AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746987.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-175	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A078GEN3	0.0	A0A078GEN3_BRANA; BnaC06g25160D protein
STRING	Bo6g095170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-168	HD-ZIP family protein

Link Out ? help Back to Top
Entrez Gene	106449852

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]