PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022091001
Common NameGSBRNA2T00022091001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 145aa    MW: 16296.6 Da    PI: 6.9756
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022091001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1871123254
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          rk+ ++ keq ++Lee F +n++++ ++++eLA  l+L++rqV vWFqNrRa+
  GSBRNA2T00022091001  71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRAR 123
                          66677789********************************************8 PP
2HD-ZIP_I/II70.82.7e-2371124154
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                          +kk+rl keq+++LEesF ++++L+p++K+ela  L+l++rqv+vWFqnrRAR+
  GSBRNA2T00022091001  71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRARV 124
                          69***************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1756123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1660123IPR009057Homeodomain-like
PROSITE profilePS5007115.83967123IPR001356Homeobox domain
SMARTSM003892.6E-1469131IPR001356Homeobox domain
CDDcd000864.41E-1670123No hitNo description
PfamPF000469.2E-1671123IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIQSFS PSPSHPLSGD HMVRDLGINQ TPKKEEDRGW IMIGTTPHIN  60
EEDENLGGRP RKKLRLIKEQ SHILEESFIQ NNTLTPKQKQ ELAILLKLSQ RQVEVWFQNR  120
RARVFGIGFL VVGDLIINES ALTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RPRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022091001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590514.14e-86PREDICTED: homeobox-leucine zipper protein ATHB-X-like
RefseqXP_013741169.14e-86homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM77e-52ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A078GFQ91e-100A0A078GFQ9_BRANA; BnaC06g24420D protein
STRINGBo6g094480.19e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-54homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]