PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021970001

Common Name

GSBRNA2T00021970001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 812aa MW: 90067.7 Da PI: 6.3034

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021970001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.7e-28	517	567	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l+++Fs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00021970001 517 EKNVSLRVLQQHFSGSLKDAARSIGVCPTTLKRICRQHGIMRWPSRKINKV 567 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.324	500	587	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-26	519	567	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	700	795	No hit	No description
PROSITE profile	PS51745	19.962	711	793	IPR000270	PB1 domain
SMART	SM00666	2.0E-22	711	793	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-22	712	792	No hit	No description
Pfam	PF00564	5.6E-17	712	792	IPR000270	PB1 domain
CDD	cd06407	1.21E-32	712	792	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MEHPFASREN GFGYQEHMDG LTIGSGVWSF ISDDMLSSSP TSELMNFNSF PTWCNIPFDT 60 DMLFSQYGQE MSSRSHHHSL DIDEISGKRR SVLNCTIPRS LSHSLDEKML KALSLFMQFS 120 GSGDGVLAQV WTPVKTGDQY MLSTCGQAYL LDPRLSQYRE VSRKFTFASK PNQSSYPGLP 180 GRVFISGVRE WTSNVMYYKK DEYLRVKHAI DNEVRGSIAI PVLEASGTSC CAVMEVVTSD 240 EKLNFDVEMD SVCRALQPES PLPKLPKGSS EDSLLWLKDL RTSVVPRPQV TSEPNKSLSY 300 VQPIISRLGY LSSNQRDALA EIQDVLRALC HAHKLPLALT WIPNSGVLCV EETACYVNDM 360 DMEGFVHACL DHPLREKEGI VGKAFVSNRP SFSSDVKSYD ISEYPLVHHA RKHGLNAAVA 420 IKLRSTYTGE DDYILELFLP LSLKGSLEQQ LLLDSLEVTL QRVCRTLRTV SDVEATNSTT 480 SIFSDKSSDK DSTGSQGTCE QDMSKARTAE RKKGTIEKNV SLRVLQQHFS GSLKDAARSI 540 GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VHGIEGGLRF DSATGEFVSV 600 CSSNGNNASC ELLKPESVDN TIKLEDDIIT NGSFMEVNAS DQQCALKAEQ SGFNDSSQAI 660 ASGNIIEPNR STSDSSNVSG AVMLRSSSPS MDHRNQMRAH KSNSSESGSA TLTVKATYRE 720 DTTRFKFDPS VGCLQLYKEV GKRFRLQEGL FQLKYFDDEE EWVMLVTDSD LQECLEMLVG 780 MQKQTVKFLV RDLPARIGSS AGSNGYLGEG L*

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MEHPFASREN GFGYQEHMDG LTIGSGVWSF ISDDMLSSSP TSELMNFNSF PTWCNIPFDT  60
DMLFSQYGQE MSSRSHHHSL DIDEISGKRR SVLNCTIPRS LSHSLDEKML KALSLFMQFS  120
GSGDGVLAQV WTPVKTGDQY MLSTCGQAYL LDPRLSQYRE VSRKFTFASK PNQSSYPGLP  180
GRVFISGVRE WTSNVMYYKK DEYLRVKHAI DNEVRGSIAI PVLEASGTSC CAVMEVVTSD  240
EKLNFDVEMD SVCRALQPES PLPKLPKGSS EDSLLWLKDL RTSVVPRPQV TSEPNKSLSY  300
VQPIISRLGY LSSNQRDALA EIQDVLRALC HAHKLPLALT WIPNSGVLCV EETACYVNDM  360
DMEGFVHACL DHPLREKEGI VGKAFVSNRP SFSSDVKSYD ISEYPLVHHA RKHGLNAAVA  420
IKLRSTYTGE DDYILELFLP LSLKGSLEQQ LLLDSLEVTL QRVCRTLRTV SDVEATNSTT  480
SIFSDKSSDK DSTGSQGTCE QDMSKARTAE RKKGTIEKNV SLRVLQQHFS GSLKDAARSI  540
GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VHGIEGGLRF DSATGEFVSV  600
CSSNGNNASC ELLKPESVDN TIKLEDDIIT NGSFMEVNAS DQQCALKAEQ SGFNDSSQAI  660
ASGNIIEPNR STSDSSNVSG AVMLRSSSPS MDHRNQMRAH KSNSSESGSA TLTVKATYRE  720
DTTRFKFDPS VGCLQLYKEV GKRFRLQEGL FQLKYFDDEE EWVMLVTDSD LQECLEMLVG  780
MQKQTVKFLV RDLPARIGSS AGSNGYLGEG L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021970001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013688446.1	0.0	protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078GAA4	0.0	A0A078GAA4_BRANA; BnaC04g48980D protein
STRING	Bo4g194380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]