PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021880001
Common NameGSBRNA2T00021880001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 808aa    MW: 91921.4 Da    PI: 10.0714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1823971294
                         HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                          ++ l++p  f+++h +gk + +kt++l++ +s r+Wevk+  ++++    lt+GWk+F+ka++L+ gD+++Fk++g+++f   v
  GSBRNA2T00021880001 23 DTH-LTIPVAFFSKHiQGK-TMKKTVKLRSyTSDRTWEVKI--DGRR----LTRGWKDFAKAHDLRIGDIIIFKHEGDMTF--SV 97
                         555.9**********6544.6778******8999*******..9998....***********************9999888..44 PP
2B366.53.8e-21156250398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            ++++++lk++ l+lp    ++  ++k+++ +++l +++g+sW+  l++r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++
  GSBRNA2T00021880001 156 VSEVTASNLKLDTLYLPVGARSSSALNKRCH-EMILVNKEGNSWTASLKFRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTP 244
                          567899*************999999999886.*****************************************************9999* PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          ++ v+ 
  GSBRNA2T00021880001 245 MMCVCP 250
                          *99996 PP
3B338.71.8e-12288385199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangL.kegDfvvFkldg 86 
                          f++++++ +++ s+ l+lp  f++ +g++k   k+++l+d++g +   kl      +++    l+kGWk F++an++ k g+++v++l++
  GSBRNA2T00021880001 288 FLTITLTRYNFISSKLILPIAFTNINGLNK--YKEIILMDKHGVKRLTKLVQdgpHNNR--RGLGKGWKLFCEANDVfKIGESFVLELVW 373
                          778888999999***********8889995..569***************777554444..45*************846*********** PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           +++ +v+k+++k
  GSBRNA2T00021880001 374 -EDTVPVLKFCSK 385
                          .78889****997 PP
4B353.44.5e-17478566598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++ ++l ++ l++p +f++++g++++   +++l +e+grsW++ l ++k+  + +l++GW++F++ang++ g   +Fkl++ +++++v+
  GSBRNA2T00021880001 478 NVTVSSLHEDKLYVPVSFVRSNGLSNTY-CKIVLLNEKGRSWKLSLVHDKS--GSYLRQGWRSFCRANGINGGRY-TFKLVR-NSETPVI 562
                          56778888999***********998765.59***************55544..4679**************9985.****98.5556888 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          ++++
  GSBRNA2T00021880001 563 RLYQ 566
                          8776 PP
5B363.24.3e-20584673798
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++++l+++ l+l+++f++++g+k  +  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D + Fkl+g +++++v+++
  GSBRNA2T00021880001 584 TPSSLRNDTLYLSRRFVNSNGLKG-KCCEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDPFKFKLVG-TREKPVLQF 671
                          78899999************9885.556****************98888889**************************99.777789998 PP

                          E- CS
                   B3  97 fr 98 
                          + 
  GSBRNA2T00021880001 672 CP 673
                          86 PP
6B368.97.1e-22707803199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++ ++ ks+ l+lp +f++ +g++k++  ++tl+ ++g  W v l+ ++k g+  l++GWk+F++a+g+k g+++v++l++++++
  GSBRNA2T00021880001 707 FVTLTVTQYSIKSNKLRLPLRFTRVNGINKAG--KITLMGQDGVNWMVHLTNENKCGKLRLGRGWKGFCEAHGVKIGESFVLELIREKDA 794
                          7788999********************99887..7***************99************************************** PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+k+++k
  GSBRNA2T00021880001 795 TPVLKFCNK 803
                          ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.29611103IPR003340B3 DNA binding domain
CDDcd100174.44E-1612100No hitNo description
SMARTSM010191.2E-2314103IPR003340B3 DNA binding domain
PfamPF023626.8E-132595IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17153243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-17154242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.281154252IPR003340B3 DNA binding domain
CDDcd100179.82E-16154250No hitNo description
SMARTSM010193.1E-21155252IPR003340B3 DNA binding domain
PfamPF023622.9E-20156250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15280385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-15282385IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-10287384No hitNo description
PROSITE profilePS508638.557288385IPR003340B3 DNA binding domain
SMARTSM010191.4E-19288386IPR003340B3 DNA binding domain
PfamPF023622.8E-12288386IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-16470562IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-18471562IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929474568IPR003340B3 DNA binding domain
CDDcd100176.66E-12474565No hitNo description
SMARTSM010192.0E-24475568IPR003340B3 DNA binding domain
PfamPF023629.3E-16477566IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-18574674IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21575678IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.098578674IPR003340B3 DNA binding domain
SMARTSM010196.0E-27579675IPR003340B3 DNA binding domain
CDDcd100172.82E-18583673No hitNo description
PfamPF023627.8E-19583673IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-21700803IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-19704801IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-15706792No hitNo description
SMARTSM010197.3E-27707804IPR003340B3 DNA binding domain
PROSITE profilePS5086314.579707803IPR003340B3 DNA binding domain
PfamPF023622.4E-21707803IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MVNPPLQSPT NPHFFQPLLP GFDTHLTIPV AFFSKHIQGK TMKKTVKLRS YTSDRTWEVK  60
IDGRRLTRGW KDFAKAHDLR IGDIIIFKHE GDMTFSVTPF GPSCCEIQYT QSHIIKKEAD  120
TDDDDEDDNE RQYKIRNGLK PKTEPISSYS FDYCFVSEVT ASNLKLDTLY LPVGARSSSA  180
LNKRCHEMIL VNKEGNSWTA SLKFRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG  240
KTTPMMCVCP EEECSELVSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS  300
SKLILPIAFT NINGLNKYKE IILMDKHGVK RLTKLVQDGP HNNRRGLGKG WKLFCEANDV  360
FKIGESFVLE LVWEDTVPVL KFCSKNVPVA FFSKHVQGRN GDKTARLRSD ASDTTWEVGE  420
LVFHVTALGS SCCEVEYTTL DDGDDNKETV LASDIKPMKK RAKKNPRKKD SCSCFLANVT  480
VSSLHEDKLY VPVSFVRSNG LSNTYCKIVL LNEKGRSWKL SLVHDKSGSY LRQGWRSFCR  540
ANGINGGRYT FKLVRNSETP VIRLYQAEHR HEDNTHSYLV GSLTPSSLRN DTLYLSRRFV  600
NSNGLKGKCC EMILKNDNGG TWCLVLRRNE TNETTVISRG WRSFCHANGL KVRDPFKFKL  660
VGTREKPVLQ FCPSESNRNT RHVDCSEGDV HSLSKKEASS SPCQNPFVTL TVTQYSIKSN  720
KLRLPLRFTR VNGINKAGKI TLMGQDGVNW MVHLTNENKC GKLRLGRGWK GFCEAHGVKI  780
GESFVLELIR EKDATPVLKF CNKVNCV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.56111e-156seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021880001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545716.10.0B3 domain-containing protein REM7-like isoform X1
RefseqXP_022545726.10.0B3 domain-containing protein REM7-like isoform X1
TrEMBLA0A078GD430.0A0A078GD43_BRANA; BnaA08g12400D protein
STRINGBra010225.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.13e-99DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]