PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021855001

Common Name

GSBRNA2T00021855001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 315aa MW: 36057.9 Da PI: 4.3929

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021855001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.8	4.9e-12	20	98	2	80
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt + l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y +ik++e++++ + +s ++ GSBRNA2T00021855001 20 WTLKDCLILVNEIAAVESDCSNALSSFQKWTMISDNCNALDVHRNFNQCRRKWDSLVSDYSQIKKWESQERGGGHSYWS 98 9999999*************************************************************98877777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.051	20	76	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-8	20	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEEGTSSGSR RTRSQVAPDW TLKDCLILVN EIAAVESDCS NALSSFQKWT MISDNCNALD 60 VHRNFNQCRR KWDSLVSDYS QIKKWESQER GGGHSYWSLS VEKRRKLNLP GNVDNELFQA 120 INAVVMIQEN KDGSEPDSDS DPEAQEDFDV VDVTAELGSK RSRQRTMVVM KENPPHKRKT 180 EEERRRKNIQ EQRAKATHQK NKTMEVKKKP VVEISTDEEE EEEEEEEEEE EEEEEEETMS 240 IEEEVKALEA KLGEKADMIH AIVGRNLAKG SETEDDVGIE DKLKFVKQQG DELIACLSEI 300 VNTLDRLREV PQEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	KRSRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25212	1e-119	bud\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021855001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009108938.1	0.0	PREDICTED: trihelix transcription factor ASR3
Refseq	XP_018508968.1	0.0	PREDICTED: trihelix transcription factor ASR3
TrEMBL	A0A078GA25	0.0	A0A078GA25_BRANA; BnaA08g12610D protein
STRING	Bra010246.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-120	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]