PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021484001
Common NameGSBRNA2T00021484001, LOC106399309, LOC106407443
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 241aa    MW: 26459.1 Da    PI: 7.6632
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021484001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.7e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++
  GSBRNA2T00021484001   2 SCNGCRVLRKGCSETCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNW 91 
                          6*********************9998777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                           ++q+++e++l+
  GSBRNA2T00021484001  92 SVCQAAVETVLR 103
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1271107IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSVCQAAVET VLRGGSLRPI PELLTRDGGF  120
PLATSDEVSE ICMEMMNDSG DRNVYHHSRF SSSRSRATAS PPKRRRLASE QQQQRPSSEL  180
DFSMVPAFPI KTTPFKEETR RPETPYSEES VTTAPFLDHI ASERFVRGGG ETTKLLNLFA  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021484001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695238.11e-179LOB domain-containing protein 38-like
RefseqXP_013703755.11e-179LOB domain-containing protein 38-like
SwissprotQ9SN231e-126LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A078GCG31e-177A0A078GCG3_BRANA; BnaC07g31610D protein
STRINGBo7g099150.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-117LOB domain-containing protein 38
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]