PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021173001
Common NameGSBRNA2T00021173001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 339aa    MW: 38579.7 Da    PI: 8.5456
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-114391155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGV + + +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+g
  GSBRNA2T00021173001 43 TKYKGVVQQP-NGHWGAQIYSE-----HRRIWLGTFKSAAEAAASYDSASIKLRG 91
                         69********.8******9994.....5***********************9997 PP
2B3901.8e-28176277187
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---...........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke.........esktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                          f k+ltpsdv+k++rlv+pkk+a +h         +   +          +++++++d+  r+W+++++y+++s+++v+t+GW++Fv+++
  GSBRNA2T00021173001 176 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisdgqkE---ReegeigeavDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVREK 262
                          889****************************76550...1455556666999************************************** PP

                          T--TT-EEEEEE-SS CS
                   B3  73 gLkegDfvvFkldgr 87 
                          +Lke+D++vF++ + 
  GSBRNA2T00021173001 263 RLKEKDVIVFYHCDV 277
                          ***********7653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-74391IPR001471AP2/ERF domain
CDDcd000188.19E-2343102No hitNo description
PROSITE profilePS5103217.84644101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1644101IPR001471AP2/ERF domain
SMARTSM003807.4E-1644109IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1344102IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.105.2E-32168274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-28173280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-27174274No hitNo description
PfamPF023622.0E-25176276IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843176288IPR003340B3 DNA binding domain
SMARTSM010191.5E-23176288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNSLNEAKTM TETSGSSNSV LCLANPMEQP HVSTTTRSVL SNTKYKGVVQ QPNGHWGAQI  60
YSEHRRIWLG TFKSAAEAAA SYDSASIKLR GIDANSYRNF PWCEITTHEP AFQANYTTEA  120
VLNMIKDCSY QHKFMEYLRR RSQLVDFANI NIVAAASKQS RGGRGVQEPF SCTPLFSKEL  180
TPSDVGKLNR LVIPKKHAVK HLPFISDGQK EREEGEIGEA VDDVEVVFYD RAMRQWKFRY  240
CYWRSSQSFV FTRGWNGFVR EKRLKEKDVI VFYHCDVPTN VMTLQGQNNS FLMIDVDYFT  300
DKGPVAPKEV DKMVHNTSEE EMKTETKGGF MLFGVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2417527213100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021173001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147781.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-169RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078GBS00.0A0A078GBS0_BRANA; BnaA06g02510D protein
STRINGBra018894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-161RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]