PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021154001
Common NameGSBRNA2T00021154001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 204aa    MW: 22311.8 Da    PI: 9.4813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021154001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-192171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrdp++   + r++lg+f++a +Aa+a++aa+++l+g
  GSBRNA2T00021154001 21 TRFRGVRKRP-WGRYAAEIRDPYK---KSRVWLGTFDSAVDAARAYDAAARNLRG 71
                         589*******.**********765...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-112171IPR001471AP2/ERF domain
CDDcd000185.68E-182180No hitNo description
Gene3DG3DSA:3.30.730.107.7E-312279IPR001471AP2/ERF domain
PROSITE profilePS5103222.552279IPR001471AP2/ERF domain
SMARTSM003801.2E-372285IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-212280IPR016177DNA-binding domain
PRINTSPR003672.2E-92334IPR001471AP2/ERF domain
PRINTSPR003672.2E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRRGRVSTPV TANHNPSIKE TRFRGVRKRP WGRYAAEIRD PYKKSRVWLG TFDSAVDAAR  60
AYDAAARNLR GPKAKTNFPI ESPPSPPQID PFMDHRLYAG ASSRPTSSSM SSTVESSSGQ  120
RSSVAKPLST TAKRYPRTPP VVPEDCHSDC GSSSSVIDDG DDDIASSSRR REPPSFKFDL  180
NFPPLDDVGL IDGVDDICTD LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2022811474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021154001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147819.11e-117PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9LDE45e-66ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A078G8N51e-144A0A078G8N5_BRANA; BnaA06g02670D protein
STRINGBra018864.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-43ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]