PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021143001
Common NameGSBRNA2T00021143001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 349aa    MW: 40764.6 Da    PI: 9.2752
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021143001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18.1e-125198154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  GSBRNA2T00021143001 51 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMSYDSASIKLR 98
                         69*****999.8*********3.....4*********************99998 PP
2B384.21.2e-26173264184
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+lt sdv+k++rlv+pkk+a ++        +g+  e++++ ++d++ r W+++++y+ +s+++vlt+GW +Fvk+++Lke+D v+F
  GSBRNA2T00021143001 173 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEIVEDVEVLFYDREMRPWKFRYCYWTSSQSFVLTRGWIGFVKEKRLKEKDLVTF 262
                          99****************************99985566799************************************************* PP

                          EE CS
                   B3  83 kl 84 
                          + 
  GSBRNA2T00021143001 263 YT 264
                          93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.30E-2351111No hitNo description
PROSITE profilePS5103217.10852109IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1452110IPR016177DNA-binding domain
SMARTSM003801.6E-1752115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1552109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-30168276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-26171265IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-24172263No hitNo description
SMARTSM010191.8E-16173276IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111173284IPR003340B3 DNA binding domain
PfamPF023626.2E-24173264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFLVSSAIPM DVAKSETLNT TTDSYLPVKK RMRLNEPPTT DKAPVSASDK TKYKGVVQHQ  60
NGHWGAQIYV DHKRIWLGTF KSAAEAAMSY DSASIKLRAF DANSQRNFPW SDLTVHEPVF  120
QKGYTTEAVL NMIKDGSYQR EFKEFLKNRS QIVSKQNRRD EESNKCFSCT QLFQKELTAS  180
DVGKLNRLVI PKKYAVKYLP FISEREEGEI VEDVEVLFYD REMRPWKFRY CYWTSSQSFV  240
LTRGWIGFVK EKRLKEKDLV TFYTCDVPTL EGQSKKFLMI DVHYFSDNNS AVTDEEVNKT  300
VHNNSSDDVM KPVYIYIYIY IYIYIYIYIS VSKIIDSKNW KENKIMRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2417226213100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021143001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147833.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-149RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078GBP30.0A0A078GBP3_BRANA; BnaA06g02760D protein
STRINGBra018854.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-143RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]