PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021112001

Common Name

GSBRNA2T00021112001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CAMTA

Protein Properties

Length: 920aa MW: 104491 Da PI: 7.7513

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021112001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.3	1.8e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n GSBRNA2T00021112001 30 EEaYTRWLRPNEIHALLSNHNYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDN 119 55589*********************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL++++e+ivlvhy+e++ GSBRNA2T00021112001 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.622	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-44	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.31E-13	371	457	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.77E-13	557	667	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.0E-15	558	670	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.7E-7	558	637	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-15	566	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	575	640	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.808	608	640	IPR002110	Ankyrin repeat
SMART	SM00248	2.7E-6	608	637	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.181	757	783	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	772	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.3E-4	795	817	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	796	820	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.5E-5	797	817	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	871	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	872	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MAGVDSGRLI GSEIHGFHTL QDLDIRTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHVSAK PVTEDINSGV 180 RNACNTARSN SLVARNHEIS LHEINTLDWD ELLVETGMTN QSSPTQDDVL YFTEQLQTAA 240 MGSAQQGNHH AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS 300 ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH 360 SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL 420 QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKAVPQE DQLYKWEEFE 480 FQVRLSHLLF TSSSKISVFS SRISPDNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD 540 QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI 600 SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY 660 EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA 720 AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI 780 QYRFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF 840 RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE 900 EAQLEYDGMQ ELNQMDIES*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MAGVDSGRLI GSEIHGFHTL QDLDIRTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHVSAK PVTEDINSGV  180
RNACNTARSN SLVARNHEIS LHEINTLDWD ELLVETGMTN QSSPTQDDVL YFTEQLQTAA  240
MGSAQQGNHH AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS  300
ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH  360
SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL  420
QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKAVPQE DQLYKWEEFE  480
FQVRLSHLLF TSSSKISVFS SRISPDNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD  540
QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI  600
SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY  660
EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA  720
AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI  780
QYRFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF  840
RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE  900
EAQLEYDGMQ ELNQMDIES*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10070	0.0	flower\| leaf\| seed\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021112001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013655759.1	0.0	calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A078GDQ7	0.0	A0A078GDQ7_BRANA; BnaA08g06080D protein
STRING	Bra038040.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]