PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00021004001 | ||||||||
Common Name | GSBRNA2T00021004001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 295aa MW: 33056.8 Da PI: 6.6916 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 36.4 | 1.1e-11 | 47 | 93 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + r+C+ +e+ ++ +fC+ + lC C e+H+ H++vp+ GSBRNA2T00021004001 47 RVRVCDSCESAPAAFFCKADAASLCTACDAEIHSAnplarrHQRVPI 93 5689*****************************66899999**9997 PP | |||||||
2 | CCT | 64.5 | 3.2e-22 | 252 | 294 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae RpR+KGrF+k+ GSBRNA2T00021004001 252 REARVLRYREKKKRRKFEKTIRYASRKAYAEVRPRIKGRFAKR 294 9****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.8 | 10 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00324 | 13 | 49 | No hit | No description |
SMART | SM00336 | 1.1E-17 | 46 | 93 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 12.429 | 46 | 93 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-9 | 48 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.67E-10 | 49 | 93 | No hit | No description |
PROSITE profile | PS51017 | 16.42 | 252 | 294 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.2E-16 | 252 | 294 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLKEESNESG CTRACDTCRS AACTIYREAD STYLCTTCDA RVHAAKRVRV CDSCESAPAA 60 FFCKADAASL CTACDAEIHS ANPLARRHQR VPITSNSCGS MATDGDNNVM MVSEEKEDAD 120 EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSSIDNQFE DQYSKYHRSF GGGEDGVVPL 180 QLEESSTSHM QQSQHNFHLG VNYGYSTEPQ YSYVSVVPES SSDTTVQHAK ETIDQVCGPP 240 TQMVQQLTPA DREARVLRYR EKKKRRKFEK TIRYASRKAY AEVRPRIKGR FAKRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 265 | KKKRR |
2 | 261 | 266 | KKKRRK |
3 | 262 | 266 | KKRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00021004001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY356370 | 0.0 | AY356370.1 Brassica rapa cultivar Samjin Col-2-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288811.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-155 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A078JYW9 | 0.0 | A0A078JYW9_BRANA; BnaAnng39160D protein (Fragment) | ||||
STRING | Bra021464.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-127 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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