PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00020640001 | ||||||||
Common Name | GSBRNA2T00020640001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 14603.5 Da PI: 4.6136 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 33.8 | 9.6e-11 | 6 | 49 | 2 | 41 |
DUF260 2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasn 41 CaaC ++ C+ + C++apyfp+++p+kf v+k+FG+ n GSBRNA2T00020640001 6 CAACEFMTGPCTfgngNACIMAPYFPSTEPAKFDRVNKVFGVVN 49 ***********8555567***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.8E-8 | 6 | 49 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVMAICAACE FMTGPCTFGN GNACIMAPYF PSTEPAKFDR VNKVFGVVNA RIHDPIHGYL 60 GPQMNLFLFS LTNEMLELNE DQKNQLRGLP DVDARRNVDE IVGMRENNQG DVLRADGAST 120 SSGPSSAPPN QNQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00020640001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597302.1 | 2e-57 | PREDICTED: LOB domain-containing protein 35-like | ||||
TrEMBL | A0A078JYS6 | 4e-95 | A0A078JYS6_BRANA; BnaAnng38890D protein | ||||
STRING | Bra019364.1-P | 3e-73 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-10 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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