PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020577001
Common NameGSBRNA2T00020577001, LOC106364156, LOC106364157
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26008.2 Da    PI: 6.152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020577001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-2067120457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq + Le  Fe+++++   ++e++A++lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00020577001  67 KRKLTDEQMNMLEYSFENEHKLESGRKEKIARELGLDPRQVAVWFQNRRARWKN 120
                          4589************************************************95 PP
2HD-ZIP_I/II1185.3e-3866157293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eq+++LE sFe+e+kLe+ rK+++areLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d++   +++Le++v  L+e+l
  GSBRNA2T00020577001  66 RKRKLTDEQMNMLEYSFENEHKLESGRKEKIARELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDTVLLGQSHLESQVLILTEQL 155
                          8**************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          +e
  GSBRNA2T00020577001 156 TE 157
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.4E-1764125IPR001356Homeobox domain
SuperFamilySSF466894.14E-1865123IPR009057Homeodomain-like
PROSITE profilePS5007116.71466121IPR001356Homeobox domain
CDDcd000863.93E-1666122No hitNo description
PfamPF000463.3E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2071121IPR009057Homeodomain-like
PRINTSPR000311.0E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDQMVLGSQV YPYTTQTHSQ CIIVNQIDGA PSGDGSKPVK RRRKRRSKGS SATNEDDVAT  60
IGAMLRKRKL TDEQMNMLEY SFENEHKLES GRKEKIAREL GLDPRQVAVW FQNRRARWKN  120
KKLEEEYAKL KSQHDTVLLG QSHLESQVLI LTEQLTEAQN EIQKLSERLV QETSTNSSSS  180
SLSVEANYAP IEFEFAPVDT NYNIPFYMMD NNYLQNMEYW DGLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KRRRKRR
26469LRKRKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020577001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659236.11e-169homeobox-leucine zipper protein ATHB-53-like
RefseqXP_013659238.11e-169homeobox-leucine zipper protein ATHB-53-like
SwissprotQ9LVR01e-110ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A078J4471e-168A0A078J447_BRANA; BnaA09g52670D protein
TrEMBLA0A397Y0031e-168A0A397Y003_BRACM; Uncharacterized protein
STRINGBra037154.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-108homeobox 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]