PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020516001
Common NameGSBRNA2T00020516001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 296aa    MW: 33044.6 Da    PI: 6.7684
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020516001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box37.93.6e-124793242
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         + r+C+ +e+ ++++fC+ +   lC  C  e+H+       H++vp+
  GSBRNA2T00020516001 47 RVRVCDSCESAPAEFFCKADAASLCTACDAEIHSAnplarrHQRVPI 93
                         5689*****************************66899999**9997 PP
2CCT64.53.2e-22253295143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae RpR+KGrF+k+
  GSBRNA2T00020516001 253 REARVLRYREKKKRRKFEKTIRYASRKAYAEVRPRIKGRFAKR 295
                          9****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.31045IPR000315B-box-type zinc finger
CDDcd000210.004171349No hitNo description
SMARTSM003364.1E-184693IPR000315B-box-type zinc finger
PROSITE profilePS5011912.5434693IPR000315B-box-type zinc finger
PfamPF006431.0E-94893IPR000315B-box-type zinc finger
CDDcd000214.16E-114993No hitNo description
PfamPF062032.2E-16253295IPR010402CCT domain
PROSITE profilePS5101716.42253295IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLKEESNESG GTRACGTCRS AACTIYREAD STYLCTNCDA RVHAAKRVRV CDSCESAPAE  60
FFCKADAASL CTACDAEIHS ANPLARRHQR VPITSNSCGS MATDGDNNVM MVSEEKEDAD  120
EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSGTDNQFG DQYNHYQRSF GGGEDGVVPL  180
QLEESSTSHM QQSQHNFHLG VNYGYSTEPH YSYISVVPES TSSDTTVQHA KETIDQVSGP  240
PTQMVQQLTP ADREARVLRY REKKKRRKFE KTIRYASRKA YAEVRPRIKG RFAKRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266KKKRR
2262267KKKRRK
3263267KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020516001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4964420.0AY496442.1 Brassica rapa cultivar Kwonsim Col-2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288811.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-158COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A078JW350.0A0A078JW35_BRANA; BnaAnng38870D protein (Fragment)
STRINGBra021464.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-146CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]