PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00020030001

Common Name

GSBRNA2T00020030001, LOC106348949

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 344aa MW: 37276.9 Da PI: 7.9995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00020030001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ GSBRNA2T00020030001 51 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 111 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	40	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	52	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQQPTPDGAA GGVERKARPE KDQAINCPRC 60 NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSISSSDI 120 GNNHSVSTQP ATKKHRSDQH HHHLMSMSQQ GLTGQNPKFL ETTQQDLNLG FPPHGLIRTN 180 FTDLIHNIGN NNKSTNSLLL SSSCSATSDM ATSPLDFIRN NNSNNGNSSF MGFPVHNQDP 240 TSGGFSMQDH YKPCNSNTTL LGFSLDHHRN NDFPGGFQGG EGGDDVNGRP LFPFEDLKLP 300 VSSSSATSNV DINDHQKRAS GGDAAATSGG YWTGMLSGGG SWC*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQQPTPDGAA GGVERKARPE KDQAINCPRC  60
NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSISSSDI  120
GNNHSVSTQP ATKKHRSDQH HHHLMSMSQQ GLTGQNPKFL ETTQQDLNLG FPPHGLIRTN  180
FTDLIHNIGN NNKSTNSLLL SSSCSATSDM ATSPLDFIRN NNSNNGNSSF MGFPVHNQDP  240
TSGGFSMQDH YKPCNSNTTL LGFSLDHHRN NDFPGGFQGG EGGDDVNGRP LFPFEDLKLP  300
VSSSSATSNV DINDHQKRAS GGDAAATSGG YWTGMLSGGG SWC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16456	5e-89	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00020030001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493696	0.0	AB493696.1 Arabidopsis thaliana At4g24060 mRNA for hypothetical protein, partial cds, clone: RAAt4g24060.
GenBank	AK317153	0.0	AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595236.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Refseq	XP_013644246.1	0.0	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	1e-172	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A078JW12	0.0	A0A078JW12_BRANA; BnaCnng74320D protein
TrEMBL	A0A0D3DFT3	0.0	A0A0D3DFT3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FAP6	0.0	A0A3P6FAP6_BRAOL; Uncharacterized protein
STRING	Bo7g109320.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-140	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106348949

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]