PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019880001
Common NameGSBRNA2T00019880001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 426aa    MW: 48541.5 Da    PI: 10.0977
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.3e-14146193956
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + q+++Le+ Fe  +++  e++ +L k lgL+ rq+ +WFqNr+ + k
  GSBRNA2T00019880001 146 TGQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANWFQNRKSRLK 193
                          569******************************************988 PP
2HD-ZIP_I/II101.11e-32147227989
          HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           qv++LE+ Fe  +kLeperK++l ++Lglqprq+a WFqnr+ R ktkqlE+dy++Lk+++d lk++n++L +++++L++
  GSBRNA2T00019880001 147 GQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANWFQNRKSRLKTKQLERDYDTLKKQLDVLKSDNDSLLAHNKKLHD 227
                          6******************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.102.6E-1274131IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-978116IPR001680WD40 repeat
SuperFamilySSF509789.62E-1280127IPR017986WD40-repeat-containing domain
PfamPF004002.4E-681115IPR001680WD40 repeat
PROSITE profilePS5008213.08285117IPR001680WD40 repeat
PROSITE profilePS5029412.1385125IPR017986WD40-repeat-containing domain
SuperFamilySSF466891.54E-14134197IPR009057Homeodomain-like
PROSITE profilePS5007114.058135195IPR001356Homeobox domain
SMARTSM003892.3E-10139199IPR001356Homeobox domain
PfamPF000462.5E-11146193IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-15147203IPR009057Homeodomain-like
CDDcd000861.03E-10148196No hitNo description
PfamPF021834.6E-11195226IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF560592.12E-9259386No hitNo description
Gene3DG3DSA:3.30.470.204.9E-4354386IPR013816ATP-grasp fold, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVAIVGENMA KKRSRTTCSP DFKLLSQMIF IIPKKLKAGN GVDLETANGR HNFKNKKFSD  60
PATVTKWKDE RMKAFYTEET PFQVLHGHTG DVLDLAWSDS NLLLSASKDK TVRLWRVGCD  120
ECLHIFHNNN YRGGGNYMIN RSMTFTGQVR ALEKIFELGN KLEPERKMQL GKALGLQPRQ  180
IANWFQNRKS RLKTKQLERD YDTLKKQLDV LKSDNDSLLA HNKKLHDGFH RCQSSNLGVV  240
GTDGAARNIF FVGSIAFQDV AHKVSALKVF LNRGDMARLK EIQEAVLQMS APKALRNELI  300
HKLRSERMSY HGDESSWNRS WLWASKWNVR AYVSRKLELT HDAACMSVLV QESCGDYAFV  360
IHTNNPVTGD PSKIHTRDCE GFGRDLGWRI SRTSNELYHQ ENKPQLANRE KQKTDSVCML  420
TPVSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019880001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325761e-150AC232576.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078J3430.0A0A078J343_BRANA; BnaA02g11290D protein
STRINGBo3g087040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.14e-45homeobox 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]