PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019262001

Common Name

GSBRNA2T00019262001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-X1

Protein Properties

Length: 919aa MW: 100564 Da PI: 8.1105

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019262001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.5	1.2e-07	230	248	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH G+C+pC+ GSBRNA2T00019262001 230 CGRHRCERSCHVGNCDPCQ 248 ******************6 PP
2	zf-NF-X1	17.1	1.2e-05	294	311	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH GpC+ C GSBRNA2T00019262001 294 CGNHLCSEVCHAGPCGDC 311 ****************99 PP
3	zf-NF-X1	21.9	3.8e-07	353	370	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C + CH G+CppC GSBRNA2T00019262001 353 CGLHTCTEACHGGDCPPC 370 ****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd06008	1.63E-5	153	213	No hit	No description
SMART	SM00438	0.023	175	193	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	6.7	177	192	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	8.18E-12	220	268	No hit	No description
SMART	SM00438	1.5E-4	230	249	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	1.6E-5	230	247	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.31E-7	284	329	No hit	No description
SMART	SM00438	6.7E-4	294	313	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	1.8E-4	294	311	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	5.36E-12	343	390	No hit	No description
SMART	SM00438	8.5E-5	353	372	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	5.0E-4	353	370	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	12	408	434	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.021	408	421	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.60E-5	428	459	No hit	No description
Pfam	PF01422	0.014	432	455	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.017	438	457	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	9.8	459	477	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.28	512	543	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.093	512	527	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	180	545	571	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.097	552	573	IPR000967	Zinc finger, NF-X1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MSSQVRRDRS RFNPQQTWVP RGSSTSIAVV NEPTERSSES LHAGSTPSRP AYLQRQHNSS 60 GHSPYNQHQR SNVTAPPPPN NAPGTRPDNR QRVASNTRPV NEWKRVLLLN LPYSLCPGCQ 120 SVQLTSSREI SYRCFCGKRK DPPSDPYLTP HSCGEPCGKP LEKEFTAETA KEDLCPHVCV 180 LQCHPGPCPP CKAFAPPRSC PCGKKMIHTR CSERRSVLVC GQRCEKLLNC GRHRCERSCH 240 VGNCDPCQVL VNATCFCKKN VETVVCGDMN VKGELKAEDG VYSCNLNCGK GLGCGNHLCS 300 EVCHAGPCGD CDLLPSRVKT CYCGKKRLEE EIRESCLEPV PSCSNICLKL LPCGLHTCTE 360 ACHGGDCPPC FVQVTQKCRC ESTSRTVECY ITSSDFVCIK PCGRKKNCGR HRCSERCHLS 420 GDLDTHLCQL PCGKNLRCLQ HSCESLCHSG HCPPCFEPCG HCATHGCHFG DCPPCSAPVE 480 KKCVGGHVVL RNIPCGLRDI RCNKTCGKTR RCGTHACART CHQEPCDAYN ESEAGLRVVT 540 CGQTCGAPRR DCRHACAALC HPSQSCPDSR CEFPVTITCS CGRITATVPC DAGSNLRVES 600 LYEASVLQKL PTTLQPVESS GNRIPLGQRK LLCDDECAKL ERKRVDITPL NLDYVHFSEN 660 SAMTEIISDI YRRDPKWVLA VEERFKLLVL GKARGSASSV LKAHVFCPMP KDKRDTVRLL 720 AERWKLASKP PTRIIGARGG PHPPCFDPLV DIDPRLVVSL LDLPREANIN ALVLRFGGEC 780 VLVWLNDKNA LVVFHDHARA TTAMRRLDYG SVYHGAVVVQ NGSQSPSLGN AMGSSSSDAQ 840 KGNPWKKAVI QESDDDTWEA DIQASTWRSV TSNTPTLTSV NRWSVLEPEK PLVKTEGSSS 900 SKSASKQPVE SSSEESGG*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MSSQVRRDRS RFNPQQTWVP RGSSTSIAVV NEPTERSSES LHAGSTPSRP AYLQRQHNSS  60
GHSPYNQHQR SNVTAPPPPN NAPGTRPDNR QRVASNTRPV NEWKRVLLLN LPYSLCPGCQ  120
SVQLTSSREI SYRCFCGKRK DPPSDPYLTP HSCGEPCGKP LEKEFTAETA KEDLCPHVCV  180
LQCHPGPCPP CKAFAPPRSC PCGKKMIHTR CSERRSVLVC GQRCEKLLNC GRHRCERSCH  240
VGNCDPCQVL VNATCFCKKN VETVVCGDMN VKGELKAEDG VYSCNLNCGK GLGCGNHLCS  300
EVCHAGPCGD CDLLPSRVKT CYCGKKRLEE EIRESCLEPV PSCSNICLKL LPCGLHTCTE  360
ACHGGDCPPC FVQVTQKCRC ESTSRTVECY ITSSDFVCIK PCGRKKNCGR HRCSERCHLS  420
GDLDTHLCQL PCGKNLRCLQ HSCESLCHSG HCPPCFEPCG HCATHGCHFG DCPPCSAPVE  480
KKCVGGHVVL RNIPCGLRDI RCNKTCGKTR RCGTHACART CHQEPCDAYN ESEAGLRVVT  540
CGQTCGAPRR DCRHACAALC HPSQSCPDSR CEFPVTITCS CGRITATVPC DAGSNLRVES  600
LYEASVLQKL PTTLQPVESS GNRIPLGQRK LLCDDECAKL ERKRVDITPL NLDYVHFSEN  660
SAMTEIISDI YRRDPKWVLA VEERFKLLVL GKARGSASSV LKAHVFCPMP KDKRDTVRLL  720
AERWKLASKP PTRIIGARGG PHPPCFDPLV DIDPRLVVSL LDLPREANIN ALVLRFGGEC  780
VLVWLNDKNA LVVFHDHARA TTAMRRLDYG SVYHGAVVVQ NGSQSPSLGN AMGSSSSDAQ  840
KGNPWKKAVI QESDDDTWEA DIQASTWRSV TSNTPTLTSV NRWSVLEPEK PLVKTEGSSS  900
SKSASKQPVE SSSEESGG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16612	1e-94	leaf\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269\|PubMed:16905136}.

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019262001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716091.1	0.0	NF-X1-type zinc finger protein NFXL1-like
Swissprot	Q9SY59	0.0	NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBL	A0A078GB72	0.0	A0A078GB72_BRANA; BnaC08g42350D protein
STRING	Bra031704.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5955	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X-like 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]