PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019012001
Common NameGSBRNA2T00019012001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 671aa    MW: 74042.5 Da    PI: 7.1879
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019012001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094705071954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00019012001 470 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 507
                          664559******************************88 PP
2BELL1215.2e-39328399172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+
  GSBRNA2T00019012001 328 DRIEYQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVVAQL 399
                          5889*****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.7E-76259397IPR006563POX domain
PfamPF075262.5E-49264395IPR006563POX domain
PROSITE profilePS5007112.568448511IPR001356Homeobox domain
CDDcd000864.79E-12451512No hitNo description
SMARTSM003891.2E-9451515IPR001356Homeobox domain
SuperFamilySSF466892.78E-17452518IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29454517IPR009057Homeodomain-like
PfamPF059203.3E-18468507IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSQDYHHHHH QQHQGGIISF SNGFDRLNST SLTAQQKQEH QRIKMDEESS VAGSGIPVYE  60
TAGILSDMFN FPGSSGAVGG GDLDHDQSFR SNRQFLEKQH QNIPGDSAAA MQLFLMNPPH  120
PPQQPPSPAS TTTTRSHHNN SSTLHMLLPN PSHQQGYTNT MSMHQIPHQH HHQQLTWQSP  180
SSSDHHHHHN SQTGGQGLSL SLSTSLEAAA KAEEYRNIYY GNSSSNTSSH HQHSQFKTLL  240
ADYSQHQFRS SPAASSSSTG AINIIRNSRY TTAAQELLEE FCTVGRGFSK KIKLRNSSNP  300
NTSGGDGGSG SPSSAGAITD QPPLSASDRI EYQRRKVKLL TMLEEVDRRY NHYCEQMQMV  360
VNSFDIVMGH GAALPYTALA QKAMSRHFRC LKDAVVAQLR QSCELLGDKD AAGISSSGLT  420
KGETPRLRLL EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD  480
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEEMYQQE SKELEENEQD QETKNSNSDK  540
STKPNNDDSN FTPVRTTSQT SMTAAQSATT APDADAAVAT GHRLRSSSDI NAYENDPSSS  600
CTNVAAVSSY AGSTAFSAVA TCQKGIGGFD DTDMDGGNAI RFGTNPTGDV SLTLGLRHVS  660
NMPDQRFFLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16457515563Homeobox protein Meis2
3k2a_B2e-16457515563Homeobox protein Meis2
4xrm_A2e-16457515563Homeobox protein Meis2
4xrm_B2e-16457515563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019012001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBankAY0504590.0AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022555743.10.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A078GCQ80.0A0A078GCQ8_BRANA; BnaC03g61760D protein
STRINGBo3g153820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]