PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018898001

Common Name

GSBRNA2T00018898001, LOC106349486

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 263aa MW: 29681.8 Da PI: 9.4614

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018898001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	60.6	7.3e-19	9	89	15	93
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....s 93 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++er+n+l+al+++en l+ GSBRNA2T00018898001 9 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERENALTALQHRENHLNyildC 89 4556677..99***************************************************************998854331 PP
2	GAGA_bind	255	4.6e-78	120	262	158	301
GAGA_bind 158 kpkekkak.kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246 ++k+kk + +kk +e+ +++ ++++ ++ ++++++ d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+ GSBRNA2T00018898001 120 NTKRKKDRkRKKAGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQ 207 33444444144445667777777777..67********************************************************** PP GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++++r++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ i+ GSBRNA2T00018898001 208 MPNKRHSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYIIIK 262 **************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-129	1	262	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.6E-89	8	262	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MMPQHQIKEQ HNALVMNKKI MSILAERDAA VKERNEALAA KQEALAARDE ALQQRDLAIS 60 ERDNAIMERE NALTALQHRE NHLNYILDCA KRGGYQTCFT EETHLPNPSP LSTIPHEPPN 120 TKRKKDRKRK KAGGEDLNRQ LASPGKKCRK DWDCNDVGLN LVTFDETTMP VPMCTCTGTA 180 RQCYKWGNGG WQSSCCTTTL SQYPLPQMPN KRHSRIGGRK MSGNVFSRLL SRLAGEGHDL 240 SSPVDLKDYW ARHGTNRYII IK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	RKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12953	0.0	microspore\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269\|PubMed:14731261}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018898001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013644912.1	0.0	protein BASIC PENTACYSTEINE5
Swissprot	F4JUI3	1e-156	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A078GAI9	0.0	A0A078GAI9_BRANA; BnaA06g37280D protein
TrEMBL	A0A397Z737	0.0	A0A397Z737_BRACM; Uncharacterized protein
STRING	Bra033583.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-143	basic pentacysteine 5

Link Out ? help Back to Top
Entrez Gene	106349486

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]