PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018840001 | ||||||||
Common Name | GSBRNA2T00018840001, LOC106352495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 131aa MW: 14755.1 Da PI: 10.7425 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.5 | 4.5e-16 | 6 | 90 | 14 | 97 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + + e+P++r+kki+k+d+d+++i +ea l++ + elf+ l+ +s l a e++r+t+ + av+r + + dfl+d p GSBRNA2T00018840001 6 ETTTRPEFPITRVKKIMKVDKDINKINSEALHLVTYSTELFLRFLADKSSLVAAEKRRKTVTLDHLRIAVKRHQpTRDFLLDSLP 90 4455779***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.54E-17 | 8 | 78 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.7E-19 | 12 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.9E-19 | 13 | 90 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MAEEEETTTR PEFPITRVKK IMKVDKDINK INSEALHLVT YSTELFLRFL ADKSSLVAAE 60 KRRKTVTLDH LRIAVKRHQP TRDFLLDSLP LPSSQPVRVT KTASEKKPPP AGTRRIDAFF 120 SKGKAKVDSP * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.275 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018840001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189413 | 0.0 | AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647572.1 | 7e-89 | nuclear transcription factor Y subunit C-5 | ||||
TrEMBL | A0A078GAF2 | 2e-87 | A0A078GAF2_BRANA; BnaA06g36810D protein | ||||
TrEMBL | A0A3P5YMZ0 | 2e-87 | A0A3P5YMZ0_BRACM; Uncharacterized protein | ||||
STRING | Bra033668.1-P | 2e-79 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-54 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Entrez Gene | 106352495 |
Publications ? help Back to Top | |||
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