PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018780001

Common Name

GSBRNA2T00018780001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 267aa MW: 29795.5 Da PI: 5.5429

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018780001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.3	1.2e-16	182	241	2	61
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L e+ee +ke ++ + GSBRNA2T00018780001 182 AAAQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENEKLSVEIEEKRKERYQKLM 241 5789**********************************************9999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-13	179	236	No hit	No description
SMART	SM00338	1.1E-11	181	245	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.5E-16	182	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	183	235	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.06E-10	185	237	No hit	No description
CDD	cd14707	1.72E-18	185	231	No hit	No description
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASFKVMHSP SSTNSDPSRR IPSSSIRPRR DPNARILGGY DGYSPAAMTV EGILHETFAS 60 DPPATDSSLL MDASPTATVS GGTDTRGKSV DEVWRGMKEE EEMMTLEDFL AKATGEDGGG 120 ESDDVDVKIP PAESYGFDHH NPFQMIDKVE GSIVAFGNGV DVYGGGARGK RARVMMEPLD 180 KAAAQRQRRM IKNRESAARS RERKQAYQVE LETLAAKLEE ENEKLSVEIE EKRKERYQKL 240 MEFVIPVVER PKQEPRFLRR IRSLEW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.1578	0.0	leaf\| microspore-derived embryo\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018780001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189402	0.0	AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022547960.1	0.0	G-box-binding factor 4-like isoform X1
Swissprot	P42777	1e-63	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A078GA92	0.0	A0A078GA92_BRANA; BnaA06g36330D protein
STRING	Bra033719.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3852	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	3e-99	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]