PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018772001 | ||||||||
Common Name | GSBRNA2T00018772001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 1640aa MW: 183961 Da PI: 5.1012 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 23 | 79 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ ql++Le+ ++ ++yps++ r++L+ +l+L++rq ++WF+ rR k++k GSBRNA2T00018772001 23 KSKRKMKTAAQLQVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRK 79 679****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-17 | 6 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-15 | 18 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.92E-14 | 23 | 81 | No hit | No description |
Pfam | PF00046 | 9.5E-16 | 23 | 79 | IPR001356 | Homeobox domain |
SMART | SM00571 | 3.7E-23 | 529 | 588 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.574 | 529 | 588 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.5E-16 | 530 | 585 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.7E-15 | 711 | 778 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 4.0E-7 | 904 | 942 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 5.3E-12 | 1057 | 1129 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1640 aa Download sequence Send to blast |
MEDGSEADKN VTPEGAAAAT ESKSKRKMKT AAQLQVLENT YKAEPYPSEA LRADLSVQLN 60 LSDRQLQMWF CHRRLKDRKS STPTKRQRKE STPSSAAESS KQAAAVNAAD LVAGNELNSF 120 DSRRTARGGG GGGVTVVRRF NEPSPTEVRA IGYVEAQLGE RLREDGPILG MEFDPLPPGA 180 FGTPIAEMPT HRKAATRPAF ETNLYVRSDV KPVKESVRTI REYQFLPEQP SSRTDHSERA 240 SPASHHYGVP LDASVVMRAS SVSGGHRDDY KVSPPIPNLN LSAHHVKPGH VLGEYDSPYQ 300 KSYVDPTLHG NEDPFVKSER ELGNDDDDED DDGDVLLQLE RKRKSEEARI AREVEAHEKR 360 IRKELERQDM LRRKREEQIR KEVERQDRER RKEEERLLRE RQREEERYLK EQMKEMQRRE 420 KFLKKETIRA EKMRQKEEMR RVKEVARLKA ANERAMARKI AKESMELIED ERLELMEVAA 480 LSLGLPSMVA LDFETLQNLD AYRDKQVTFP PTSVNLKKPF AVKPWNGSDE NIANLLMVWR 540 FLINFADVLG LWPFTLDEFT QAFHDHDPRL MGEIHIVLLK TIIKDIEGVA RTLSVGVGAN 600 QNAAANPGGG HPHLVEGAYA WGFDIRSWRK NLNVFTWPEI LRQLALSAGF GPELKKQDIK 660 TMSVHDENEA NNSENVIFNL RIGAAAENAF AKMQEKGLSN PRRSRHRLTP GTVKFAAFHV 720 LSIEGEKGLT ILEVAEKIQK SGLRDLTTSR TPEASVAAAL SRDTKLFERV APSTYCVRPS 780 YRKDAGDAET IFAEARERIR MFKSGVTDVE DVDEAEREED SDSDVGDEPE VDLNLKKEDP 840 DALEEIGKLT GGVEPSLENG KLETEPEANP LTPSLPEEST KDEKIDDILP DQEDGDCFDV 900 SKLGEQWVQG LVEGDYSSLS IEERLNALVA LIGIAIEGNT IRISLEERLE VASALKKQMW 960 SEVQLDKRWK EESLIRANYL SYPTPKTQES PSASQDPLSL PQIDVAAGPS LQLQENVSGM 1020 ENLQYHHQQS YTADRERLRA ELKAYVGYKA EELYVYRSLP LGLDRRRNRY WRFSASASRN 1080 DPGCGRIFVE LQDGRWRLID SEEGFDCLVK SLDVRGVRES HLHFMLLKME ASFKEAVRRN 1140 VETSTGLDTD TAEISSTFKI ELGDGGRSGV LQRFQSFERW MWDNMVHPGA LSAFKYGAKK 1200 STPLFHICRS CAELHFAVDV CCPGCGQMMM SGGLDVSEMC FADQLGEISR RDAGFILRGS 1260 NLSPLRIRLL KIQLALVEAS LPPEGLQTHW TESLRKTWGL KLLSSSSPEE LHQVLAMLEV 1320 ALKKDFLSSN FETTCELLDL SEEALVRDVK VVPWIPKTTG GVALRLFELD SSIAYTPDQN 1380 KDPQKDKESE DFVGLETNFL RNVQEHDVIE ATPVQVAYAQ EDTEPGSGRG RPPRGRGRPR 1440 SQRGKKPSPA SGKPPRSAAN SNGEPMLRPR AQPRGGRKKG RRSSGTRTRP TKGTLGISNE 1500 VVGVGGGGRR GKEVNVNAKT ALHDWVVETP DDDGEASSSG RSFQYDDDVM APVDDFGESS 1560 KLVGRGEFSL HSDDEYEEED MDTKMNVDDE DEDYINEEDS DGGREQATEM ISMDDAAASQ 1620 RRFPFEDPDL TSSSSSDFQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018772001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005239 | 2e-94 | AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1. | |||
GenBank | CP002688 | 2e-94 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013706142.1 | 0.0 | homeobox-DDT domain protein RLT2-like isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A078G748 | 0.0 | A0A078G748_BRANA; BnaA06g36270D protein | ||||
STRING | Bra033725.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9601 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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