PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018514001

Common Name

GSBRNA2T00018514001, LOC106427941

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CO-like

Protein Properties

Length: 367aa MW: 40407.6 Da PI: 6.1729

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018514001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C ++H+ H++ GSBRNA2T00018514001 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSIHSAnalskrHSR 44 6*****************************65677777765 PP
2	zf-B_box	23	1.6e-07	46	94	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...........Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ GSBRNA2T00018514001 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnnsnslsshHKRQS 94 68*****************************888888888888887765 PP
3	CCT	60.8	4.5e-21	309	352	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrF k+ GSBRNA2T00018514001 309 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFIKAG 352 99**************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.712	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.55E-7	4	47	No hit	No description
SMART	SM00336	5.9E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.015	43	95	IPR000315	B-box-type zinc finger
CDD	cd00021	4.48E-4	47	75	No hit	No description
SMART	SM00336	0.5	48	95	IPR000315	B-box-type zinc finger
Pfam	PF06203	4.0E-16	309	351	IPR010402	CCT domain
PROSITE profile	PS51017	15.08	309	351	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNN NNSNSLSSHH KRQSISCYSG CPSSSELASL WSFCSDLSGS 120 VCEQEMGMMN IDDDGQTNQN CNEAKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY 180 DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS 240 FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN 300 NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL 360 TPTRSY*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNSNSLSSHH KRQSISCYSG CPSSSELASL WSFCSDLSGS  120
VCEQEMGMMN IDDDGQTNQN CNEAKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY  180
DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS  240
FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN  300
NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL  360
TPTRSY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018514001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013724116.1	0.0	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_013724117.1	0.0	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_013724118.1	0.0	zinc finger protein CONSTANS-LIKE 9
Swissprot	Q9SSE5	0.0	COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A078G6N0	0.0	A0A078G6N0_BRANA; BnaC01g39760D protein
STRING	Bra040020.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1682	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	0.0	CONSTANS-like 9

Link Out ? help Back to Top
Entrez Gene	106427941

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]