PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018502001

Common Name

GSBRNA2T00018502001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 476aa MW: 53233.8 Da PI: 7.3041

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018502001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+ GSBRNA2T00018502001 14 KKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKR 69 899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-19	4	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	10	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-17	12	77	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-19	12	74	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	14	69	IPR001356	Homeobox domain
CDD	cd00086	1.10E-17	14	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF 60 CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKPREVESQR 120 LYDDDGEDST SSERRSLHKN LVSSKDVESS RYVGHSEHHP QAMRSYGVSK PSGYLKVKGD 180 SENVAITAVK RQLGRQYRED GPPLGVEFDP LPPGAFDPQT NNVIVQEPIY VGNQRRSHPP 240 YFTGTRKSFV PGLSYEPARK PKMLSSDPYS SSEEEDEDDD DDDMMGGMEP GLGDKQTLRE 300 PSFKSPSLLT VPDRKGPPQG VPLTNSKKSH ISSKGRAEGS RNNLIDNFHN LSGTSQTHDY 360 DKSILNGGRK TGYLTKSSNM LPLSGSRSSD SMERDTSSGM VGKYHGEKMN HMKMHREKLH 420 STGEPLVTKR LKHGYSQQVY SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF  60
CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKPREVESQR  120
LYDDDGEDST SSERRSLHKN LVSSKDVESS RYVGHSEHHP QAMRSYGVSK PSGYLKVKGD  180
SENVAITAVK RQLGRQYRED GPPLGVEFDP LPPGAFDPQT NNVIVQEPIY VGNQRRSHPP  240
YFTGTRKSFV PGLSYEPARK PKMLSSDPYS SSEEEDEDDD DDDMMGGMEP GLGDKQTLRE  300
PSFKSPSLLT VPDRKGPPQG VPLTNSKKSH ISSKGRAEGS RNNLIDNFHN LSGTSQTHDY  360
DKSILNGGRK TGYLTKSSNM LPLSGSRSSD SMERDTSSGM VGKYHGEKMN HMKMHREKLH  420
STGEPLVTKR LKHGYSQQVY SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018502001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608630.1	0.0	PREDICTED: uncharacterized protein LOC106315448
TrEMBL	A0A078G9T7	0.0	A0A078G9T7_BRANA; BnaA09g01430D protein
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]