PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018502001
Common NameGSBRNA2T00018502001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 476aa    MW: 53233.8 Da    PI: 7.3041
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018502001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-191469257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR   t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+
  GSBRNA2T00018502001 14 KKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKR 69
                         899***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-19469IPR009057Homeodomain-like
PROSITE profilePS5007116.8111070IPR001356Homeobox domain
SuperFamilySSF466892.91E-171277IPR009057Homeodomain-like
SMARTSM003891.6E-191274IPR001356Homeobox domain
PfamPF000461.5E-161469IPR001356Homeobox domain
CDDcd000861.10E-171470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF  60
CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKPREVESQR  120
LYDDDGEDST SSERRSLHKN LVSSKDVESS RYVGHSEHHP QAMRSYGVSK PSGYLKVKGD  180
SENVAITAVK RQLGRQYRED GPPLGVEFDP LPPGAFDPQT NNVIVQEPIY VGNQRRSHPP  240
YFTGTRKSFV PGLSYEPARK PKMLSSDPYS SSEEEDEDDD DDDMMGGMEP GLGDKQTLRE  300
PSFKSPSLLT VPDRKGPPQG VPLTNSKKSH ISSKGRAEGS RNNLIDNFHN LSGTSQTHDY  360
DKSILNGGRK TGYLTKSSNM LPLSGSRSSD SMERDTSSGM VGKYHGEKMN HMKMHREKLH  420
STGEPLVTKR LKHGYSQQVY SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018502001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225430.0AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608630.10.0PREDICTED: uncharacterized protein LOC106315448
TrEMBLA0A078G9T70.0A0A078G9T7_BRANA; BnaA09g01430D protein
STRINGBo9g006450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.10.0HB-other family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]