PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018334001 | ||||||||
Common Name | GSBRNA2T00018334001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 546aa MW: 62376 Da PI: 6.7589 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.6 | 3.6e-21 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvlt sd + +g ++l kk a e+ ++++ +++ +d++ +W++k+++r++++r+++t+GWkeFvk ++L +gD++vF GSBRNA2T00018334001 124 FTKVLTASDIGPHGDFILFKKDAIEClppldmsQLIPS--QEIAAKDLHDHVWKFKHTFRGTPKRHLFTSGWKEFVKGKNLTVGDSFVFL 211 89****************************98877764..58************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++e +v+++++ GSBRNA2T00018334001 212 --RGENGESRVGIRKA 225 ..34788889*99986 PP | |||||||
2 | Auxin_resp | 77.4 | 3.7e-26 | 250 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a++a++tk++F+v+Y+P++ s+F+v+++k+++a+++k+ +Rf m+fe+ d++e+ +sGt+v v+d ++ W++S+Wr+L+ GSBRNA2T00018334001 250 ASNAIHTKCMFDVFYKPKS--SKFIVNCDKFLDAVNRKLNTSSRFTMKFEGHDFNEIIYSGTIVKVED-FSIYWKDSEWRNLQ 329 6799*************96..9**********************************************.567*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-36 | 116 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-28 | 119 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-20 | 122 | 224 | No hit | No description |
PROSITE profile | PS50863 | 11.843 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-19 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-18 | 124 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-25 | 250 | 329 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.971 | 466 | 545 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.34E-10 | 467 | 540 | No hit | No description |
Pfam | PF02309 | 2.3E-6 | 507 | 540 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MANNQIMNAQ PKFRGTEGVN RYLYDQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQLVASA 60 NDNLCQLKPI FDISSRIHCN VVSIKLRVET NTDEVYAKVS LLPCPPEVEI PFPNDNNEQN 120 IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIAAKDLH DHVWKFKHTF 180 RGTPKRHLFT SGWKEFVKGK NLTVGDSFVF LRGENGESRV GIRKASHQQS DMSSSVISKE 240 SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNRKLNTSS RFTMKFEGHD 300 FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIPSSNILK 360 SVIRNNKRQR EINEFVSYAG PIISKPDYND QMVQSTKENS TTNASSSFRL FGVDLTASTK 420 ARDVLEPLES YQKNKTSEIF EEENLDQIQA VTSLTEIQRK EISFTTSSTK VHMEGVVRTV 480 DLTVFNGYNH MIVELEKLFN IEGKLHMHSQ WKLTFKDHEG DMMLVGDDPW PKFCNIVKEI 540 VISSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-115 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldw_A | 1e-115 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldw_B | 1e-115 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018334001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979488 | 0.0 | JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013710711.1 | 0.0 | putative auxin response factor 21 | ||||
Swissprot | Q9C8N9 | 0.0 | ARFU_ARATH; Putative auxin response factor 21 | ||||
TrEMBL | A0A078GBD4 | 0.0 | A0A078GBD4_BRANA; Auxin response factor | ||||
STRING | Bra034234.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34410.1 | 0.0 | auxin response factor 21 |
Publications ? help Back to Top | |||
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