PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018334001
Common NameGSBRNA2T00018334001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 546aa    MW: 62376 Da    PI: 6.7589
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018334001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.6e-21124225199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvlt sd + +g ++l kk a e+       ++++   +++  +d++  +W++k+++r++++r+++t+GWkeFvk ++L +gD++vF 
  GSBRNA2T00018334001 124 FTKVLTASDIGPHGDFILFKKDAIEClppldmsQLIPS--QEIAAKDLHDHVWKFKHTFRGTPKRHLFTSGWKEFVKGKNLTVGDSFVFL 211
                          89****************************98877764..58************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++e +v+++++
  GSBRNA2T00018334001 212 --RGENGESRVGIRKA 225
                          ..34788889*99986 PP

2Auxin_resp77.43.7e-26250329183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++a++tk++F+v+Y+P++  s+F+v+++k+++a+++k+   +Rf m+fe+ d++e+ +sGt+v v+d  ++ W++S+Wr+L+
  GSBRNA2T00018334001 250 ASNAIHTKCMFDVFYKPKS--SKFIVNCDKFLDAVNRKLNTSSRFTMKFEGHDFNEIIYSGTIVKVED-FSIYWKDSEWRNLQ 329
                          6799*************96..9**********************************************.567*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-36116238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-28119232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-20122224No hitNo description
PROSITE profilePS5086311.843124226IPR003340B3 DNA binding domain
SMARTSM010194.7E-19124226IPR003340B3 DNA binding domain
PfamPF023621.6E-18124225IPR003340B3 DNA binding domain
PfamPF065077.2E-25250329IPR010525Auxin response factor
PROSITE profilePS5174518.971466545IPR000270PB1 domain
SuperFamilySSF542778.34E-10467540No hitNo description
PfamPF023092.3E-6507540IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MANNQIMNAQ PKFRGTEGVN RYLYDQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQLVASA  60
NDNLCQLKPI FDISSRIHCN VVSIKLRVET NTDEVYAKVS LLPCPPEVEI PFPNDNNEQN  120
IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIAAKDLH DHVWKFKHTF  180
RGTPKRHLFT SGWKEFVKGK NLTVGDSFVF LRGENGESRV GIRKASHQQS DMSSSVISKE  240
SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNRKLNTSS RFTMKFEGHD  300
FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIPSSNILK  360
SVIRNNKRQR EINEFVSYAG PIISKPDYND QMVQSTKENS TTNASSSFRL FGVDLTASTK  420
ARDVLEPLES YQKNKTSEIF EEENLDQIQA VTSLTEIQRK EISFTTSSTK VHMEGVVRTV  480
DLTVFNGYNH MIVELEKLFN IEGKLHMHSQ WKLTFKDHEG DMMLVGDDPW PKFCNIVKEI  540
VISSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1152335219355Auxin response factor 1
4ldw_A1e-1152335219355Auxin response factor 1
4ldw_B1e-1152335219355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018334001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794880.0JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710711.10.0putative auxin response factor 21
SwissprotQ9C8N90.0ARFU_ARATH; Putative auxin response factor 21
TrEMBLA0A078GBD40.0A0A078GBD4_BRANA; Auxin response factor
STRINGBra034234.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34410.10.0auxin response factor 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]