PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018279001

Common Name

GSBRNA2T00018279001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 480aa MW: 53563.9 Da PI: 6.9388

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018279001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++e+A+++gLte+qV+ WF+ rR k+k+ GSBRNA2T00018279001 14 KKRKLKTPMQVMALENFYNEHKYPSEEMKAEIAEEIGLTEKQVSGWFCHRRLKDKR 69 899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-20	4	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	10	70	IPR001356	Homeobox domain
SMART	SM00389	6.0E-20	12	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-17	12	77	IPR009057	Homeodomain-like
Pfam	PF00046	8.0E-17	14	69	IPR001356	Homeobox domain
CDD	cd00086	6.07E-18	14	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAEIAEEIG LTEKQVSGWF 60 CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKAREVESQR 120 LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQAMRSHGAS KPSGYLKVKG 180 DSENVAITAV KRQLGRQYRE DGPPLGVEFD PLPPGAFEPQ TNNVIVQEPI YVGNQRRSQP 240 PYFTGTRKSF VPGPSYEPAR KPKMLSSDPY SSSEEEEDDD DDDDDMMGGM EPGLGDKQSL 300 REPSFKSPSL SYSNTVPDRK GPPQGVPLTN SKKSHISSKG RAEGSRNNLI DNFHNLSGTS 360 QAHDYDKSIL NGGRKTGYLT KSSNMLPLSG SRSSDSMERD TSSGMVGKYH GEKINHMKMH 420 REKLHSTGEP LVTKRLKHGY PQQVYSETFE RKDQINRSGV ELPSSFNGDE TEESSSSMD*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAEIAEEIG LTEKQVSGWF  60
CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC GSTKQTDYWN PKAREVESQR  120
LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQAMRSHGAS KPSGYLKVKG  180
DSENVAITAV KRQLGRQYRE DGPPLGVEFD PLPPGAFEPQ TNNVIVQEPI YVGNQRRSQP  240
PYFTGTRKSF VPGPSYEPAR KPKMLSSDPY SSSEEEEDDD DDDDDMMGGM EPGLGDKQSL  300
REPSFKSPSL SYSNTVPDRK GPPQGVPLTN SKKSHISSKG RAEGSRNNLI DNFHNLSGTS  360
QAHDYDKSIL NGGRKTGYLT KSSNMLPLSG SRSSDSMERD TSSGMVGKYH GEKINHMKMH  420
REKLHSTGEP LVTKRLKHGY PQQVYSETFE RKDQINRSGV ELPSSFNGDE TEESSSSMD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018279001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013688566.1	0.0	uncharacterized protein LOC106392300
TrEMBL	A0A078G992	0.0	A0A078G992_BRANA; BnaC09g00550D protein
TrEMBL	A0A3P6D9L2	0.0	A0A3P6D9L2_BRAOL; Uncharacterized protein
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]