PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018083001 | ||||||||
Common Name | GSBRNA2T00018083001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 336aa MW: 36460 Da PI: 7.5805 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 51 | 111 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ GSBRNA2T00018083001 51 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 111 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-26 | 43 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-33 | 52 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQEPTPDGAA GGVERKARPE KDQAINCPRC 60 NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSISSSDI 120 GNNHSKHRSD QHHHHLMSMS QQGLTGQNPK FLETTQQDLN LGFPPPHGLI RTNFTDLIHN 180 IGNNNKSTNN LLLSSSCSAT SAMATSPLDF IRNNNSNNGN SSFMGFPVHN QDPTSGGFSM 240 QDHYKPCNSN TTLLGFSLDH HRNNDFPGGF QGGEGGDDVN GRPLFPFEDL KLPVSSSSAT 300 SNVDINDHQK QASGGDAAAT SGGYWTGMLS GGSWC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16456 | 2e-88 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018083001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317153 | 0.0 | AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137416.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Refseq | XP_022570837.1 | 0.0 | dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 1e-166 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A078JYC1 | 0.0 | A0A078JYC1_BRANA; BnaAnng38460D protein | ||||
STRING | Bra019247.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-132 | Dof family protein |
Publications ? help Back to Top | |||
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