PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00018081001 | ||||||||
Common Name | GSBRNA2T00018081001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 208aa MW: 23933.7 Da PI: 10.7073 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.7 | 6.7e-09 | 172 | 204 | 3 | 38 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 y+GV++++++grW A+I + +k +lg+fg GSBRNA2T00018081001 172 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGN 204 9***************988532...5********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.021 | 26 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-4 | 86 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-9 | 102 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-8 | 103 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-6 | 170 | 204 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.029 | 171 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.231 | 171 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-5 | 171 | 204 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-4 | 172 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MIIIRFLSIT TVVITTVRES STITTERRQI LRRRSLLWQW KDQILLTRRS LIRLDKGLPF 60 TEELQDIDGR EGMKLIYGII AVGEKVRPGK DVKSLHLLRC FCLYLGGYDK EDKAARAYDL 120 AALKYWNTAA TTNFPITNYS KELEEMKHMT KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ 180 QGRWQARIGR VAGNKDLYLG TFGNSNQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.15230 | 3e-43 | seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00018081001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 1e-100 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078K1C6 | 1e-151 | A0A078K1C6_BRANA; BnaCnng73930D protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-64 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|