PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00017886001

Common Name

GSBRNA2T00017886001, LOC106437552

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 324aa MW: 35235.6 Da PI: 9.2082

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00017886001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.8e-12	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky GSBRNA2T00017886001 58 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 102 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.76E-16	52	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.758	53	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-6	56	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-18	56	105	IPR006447	Myb domain, plants
SMART	SM00717	9.6E-10	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-10	58	102	IPR001005	SANT/Myb domain
CDD	cd00167	1.36E-7	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVSRNPNPAD GSFLDPNAMT VVPAIGPFAA VAEAAETVSS GEDLSKKIRK PYTITKSRES 60 WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG TGEHLPPPRP 120 KRKAAHPYPQ KAHKNAQPQV PGSFKSAAPE PIDPSSYMFR PESSSMLMTS PTTPAAPAAP 180 WTNNVQTISF TPLPKAGAGA GANNNCSSSS ENTPKPRSNR DTTEQANPSH SLRVLPDFAQ 240 VYSFIGSVFD PYASNHLQKL KKMDPIDVET VLLLMRNLSI NLSSPDFEDH RRLLSAYDIG 300 SEAATDPGGG SKTLNKDPPE IST*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27160	0.0	root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00017886001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132518.1	0.0	PREDICTED: protein REVEILLE 6-like isoform X1
Refseq	XP_013733910.1	0.0	protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	0.0	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A078IZZ2	0.0	A0A078IZZ2_BRANA; BnaA03g12550D protein
STRING	Bo3g023120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	1e-143	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	106437552

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]