PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017883001
Common NameGSBRNA2T00017883001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 200aa    MW: 22939.9 Da    PI: 8.4919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017883001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W +eEd +l ++v+ +G g+W+ I+r+ g++R +k+c++rw +yl
  GSBRNA2T00017883001 14 RGLWKPEEDMILRNCVESHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                         788*****************************99************97 PP
2Myb_DNA-binding50.35.6e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00017883001  67 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                          6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21864IPR009057Homeodomain-like
PROSITE profilePS5129417.879961IPR017930Myb domain
SuperFamilySSF466896.24E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001672.09E-101761No hitNo description
PROSITE profilePS5129424.58462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2365115IPR009057Homeodomain-like
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001675.48E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEKKEEERKS HVRRGLWKPE EDMILRNCVE SHGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGGM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSTSRK  120
QNATESVEAP TDKTVMSTGV RHSHGEQGEG EEGTTNWMEE TNCLAYDDHI GSPLPLISHY  180
TDTLVFDPCF AFMDCFPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141157107B-MYB
1h8a_C2e-221411527127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017883001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132523.11e-149PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-112MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078J2101e-147A0A078J210_BRANA; BnaA03g12580D protein
TrEMBLA0A397ZUR01e-147A0A397ZUR0_BRACM; Uncharacterized protein
TrEMBLM4EJZ61e-147M4EJZ6_BRARP; Uncharacterized protein
STRINGBra029113.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-110myb domain protein 82
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]