PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017529001
Common NameGSBRNA2T00017529001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 38910.4 Da    PI: 8.5912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017529001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10167197131
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkas 31 
                          +r +h  +Er+RR+r+N+ ++ Lr+llP+++
  GSBRNA2T00017529001 167 QRINHIVVERNRRRRMNEHINSLRSLLPPSY 197
                          699*************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-13157229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.462166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7167197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10168229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-4172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSFLFCFFGG SQKERFQGHI NPCFLDRKAD TRSLEVQGFK EAQSFAFKEE EEESMQDTVP  60
FLQMLQSEEP SFLRLLSLQN LKEPWEVESF LSQEGHPHFY QNQVSALYIE GAKQALSSQE  120
ADMILLHSSS PQHKRKNSDL LAPDMTREKR KRRKTKPNKN IEEIENQRIN HIVVERNRRR  180
RMNEHINSLR SLLPPSYIQR TKHPFVGGAI HYAKVLEQII QSLESQKRTQ QSSGVENRVR  240
EDETRVPSIE TTVVQNHVNL KVVCRKRQGE LIRGIISLEK LRLTVLHLNI STLSRFYVSC  300
CFNLKMEDGC ELDSADEIKK VAHQIFDMPM NLNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133153KRKNSDLLAPDMTREKRKRRK
2148153KRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.241040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017529001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573551.10.0transcription factor bHLH67-like
SwissprotQ700E41e-128BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078IZD90.0A0A078IZD9_BRANA; BnaCnng29570D protein
STRINGfgenesh2_kg.5__2692__AT3G61950.11e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-111bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]